ENSDARG00000069912


Danio rerio

Features
Gene ID: ENSDARG00000069912
  
Biological name :hmga2
  
Synonyms : high mobility group AT-hook 2 / hmga2
  
Possible biological names infered from orthology : P52926 / P52927
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 12819272
Gene end: 12862087
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000074985
NCBI entrez gene - 324428     See in Manteia.
RefSeq - NM_212680
RefSeq Peptide - NP_997845
swissprot - Q6P038
ZFIN ID - ZDB-GENE-030131-3148
Ensembl - ENSDARG00000069912
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGA2ENSGALG00000009875Gallus gallus
 HMGA2ENSG00000149948Homo sapiens
 Hmga2ENSMUSG00000056758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-161c3.6 / HMGA2* / P52926* / P52927* / high mobility group AT-hook 2*ENSDARG0000007878138


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR000637  HMG-I/HMG-Y, DNA-binding, conserved site
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000013434 hira / histone cell cycle regulator a / P54198* / Q61666* / Protein HIRA * / histone cell cycle regulator*  / reaction / complex
 ENSDARG00000038559 h1f0 / H1 histone family, member 0 / P07305* / P10922* / Histone H1.0 Histone H1.0, N-terminally processed*  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr