ENSG00000149948


Homo sapiens

Features
Gene ID: ENSG00000149948
  
Biological name :HMGA2
  
Synonyms : high mobility group AT-hook 2 / HMGA2 / P52926
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q14.3
Gene start: 65824131
Gene end: 65966295
  
Corresponding Affymetrix probe sets: 1558682_at (Human Genome U133 Plus 2.0 Array)   1558683_a_at (Human Genome U133 Plus 2.0 Array)   1559891_at (Human Genome U133 Plus 2.0 Array)   1561633_at (Human Genome U133 Plus 2.0 Array)   1567223_at (Human Genome U133 Plus 2.0 Array)   1567224_at (Human Genome U133 Plus 2.0 Array)   1568286_at (Human Genome U133 Plus 2.0 Array)   1568287_at (Human Genome U133 Plus 2.0 Array)   208025_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000443372
Ensembl peptide - ENSP00000439317
Ensembl peptide - ENSP00000440919
Ensembl peptide - ENSP00000346658
Ensembl peptide - ENSP00000377205
Ensembl peptide - ENSP00000377206
Ensembl peptide - ENSP00000384026
Ensembl peptide - ENSP00000407306
Ensembl peptide - ENSP00000437621
Ensembl peptide - ENSP00000437747
NCBI entrez gene - 8091     See in Manteia.
OMIM - 600698
RefSeq - XM_017019989
RefSeq - NM_001300918
RefSeq - NM_001300919
RefSeq - NM_001330190
RefSeq - NM_003483
RefSeq - NM_003484
RefSeq Peptide - NP_003475
RefSeq Peptide - NP_001287847
RefSeq Peptide - NP_001287848
RefSeq Peptide - NP_001317119
RefSeq Peptide - NP_003474
swissprot - F5H2U8
swissprot - P52926
swissprot - F5H2A4
swissprot - F5H6H0
swissprot - H0YFY4
Ensembl - ENSG00000149948
  
Related genetic diseases (OMIM): 150699 - Leiomyoma, uterine, somatic, 150699

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmga2ENSDARG00000069912Danio rerio
 si:ch211-161c3.6ENSDARG00000078781Danio rerio
 HMGA2ENSGALG00000009875Gallus gallus
 Hmga2ENSMUSG00000056758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR000637  HMG-I/HMG-Y, DNA-binding, conserved site
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001837 epithelial to mesenchymal transition IMP
 biological_processGO:0002062 chondrocyte differentiation IDA
 biological_processGO:0003131 mesodermal-endodermal cell signaling IMP
 biological_processGO:0006284 base-excision repair IDA
 biological_processGO:0006325 chromatin organization TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007095 mitotic G2 DNA damage checkpoint IDA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0009615 response to virus IEP
 biological_processGO:0010564 regulation of cell cycle process IDA
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0030261 chromosome condensation IEA
 biological_processGO:0031052 chromosome breakage IDA
 biological_processGO:0031507 heterochromatin assembly IDA
 biological_processGO:0033144 negative regulation of intracellular steroid hormone receptor signaling pathway IEA
 biological_processGO:0035978 histone H2A-S139 phosphorylation IDA
 biological_processGO:0035986 senescence-associated heterochromatin focus assembly IDA
 biological_processGO:0035987 endodermal cell differentiation IMP
 biological_processGO:0035988 chondrocyte proliferation IDA
 biological_processGO:0040008 regulation of growth IEA
 biological_processGO:0042769 DNA damage response, detection of DNA damage IDA
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0043066 negative regulation of apoptotic process IDA
 biological_processGO:0043392 negative regulation of DNA binding IDA
 biological_processGO:0043922 negative regulation by host of viral transcription IDA
 biological_processGO:0045444 fat cell differentiation IMP
 biological_processGO:0045766 positive regulation of angiogenesis ISS
 biological_processGO:0045869 negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IEA
 biological_processGO:0048333 mesodermal cell differentiation IMP
 biological_processGO:0048762 mesenchymal cell differentiation IMP
 biological_processGO:0048863 stem cell differentiation IEP
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0071158 positive regulation of cell cycle arrest IDA
 biological_processGO:0071864 positive regulation of cell proliferation in bone marrow ISS
 biological_processGO:0090402 oncogene-induced cell senescence IDA
 biological_processGO:2000036 regulation of stem cell population maintenance TAS
 biological_processGO:2000648 positive regulation of stem cell proliferation IMP
 biological_processGO:2000679 positive regulation of transcription regulatory region DNA binding IDA
 biological_processGO:2000685 positive regulation of cellular response to X-ray IDA
 biological_processGO:2000773 negative regulation of cellular senescence ISS
 biological_processGO:2000774 positive regulation of cellular senescence IMP
 biological_processGO:2001022 positive regulation of response to DNA damage stimulus IDA
 biological_processGO:2001033 negative regulation of double-strand break repair via nonhomologous end joining IDA
 biological_processGO:2001038 regulation of cellular response to drug IDA
 cellular_componentGO:0000228 nuclear chromosome ISS
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0032993 protein-DNA complex IDA
 cellular_componentGO:0035985 senescence-associated heterochromatin focus IDA
 cellular_componentGO:0071141 SMAD protein complex IDA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003680 AT DNA binding TAS
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IDA
 molecular_functionGO:0004677 DNA-dependent protein kinase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0008301 DNA binding, bending IMP
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IDA
 molecular_functionGO:0035497 cAMP response element binding IDA
 molecular_functionGO:0035500 MH2 domain binding IDA
 molecular_functionGO:0035501 MH1 domain binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046332 SMAD binding IPI
 molecular_functionGO:0051575 5"-deoxyribose-5-phosphate lyase activity IDA
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IMP


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000131 Uterine leiomyoma 
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000325 Triangular facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000445 Broad nose 
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 HP:0000490 Deep set eyes 
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0000819 Diabetes mellitus 
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 HP:0000953 Hyperpigmentation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001428 Somatic mutation 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001743 Abnormality of the spleen 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002579 Gastrointestinal dysmotility 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003396 Syringomyelia 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005288 Abnormality of the nares "Abnormality of the `nostril` (FMA:59645)." [HPO:curators]
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 HP:0010739 Osteopoikilosis "Osteopoikilosis is a benign, asymptomatic sclerotic dysplasia of the bones. It affects both male and female and may be seen at any age. Radiographically sclerotic circular or ovoid lesions are usually symmetrically distributed in a periarticular location. Lesions can increase or decrease in size and number in serial radiographs or even disappear and do not have increased bone radiotracer uptake." [HPO:sdoelken]
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 HP:0012211 Abnormal renal physiology "Any functional anomaly of the `kidney` (FMA:7203)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000118900 UBN1 / Q9NPG3 / ubinuclein 1  / complex / reaction
 ENSG00000111875 ASF1A / Q9Y294 / anti-silencing function 1A histone chaperone  / reaction / complex
 ENSG00000137309 HMGA1 / P17096 / high mobility group AT-hook 1  / reaction / complex
 ENSG00000189060 H1F0 / P07305 / H1 histone family member 0  / reaction
 ENSG00000099991 CABIN1 / Q9Y6J0 / calcineurin binding protein 1  / reaction / complex
 ENSG00000100084 HIRA / P54198 / histone cell cycle regulator  / complex / reaction






 

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