ENSDARG00000038559


Danio rerio

Features
Gene ID: ENSDARG00000038559
  
Biological name :h1f0
  
Synonyms : h1f0 / H1 histone family, member 0
  
Possible biological names infered from orthology : Histone H1.0 Histone H1.0, N-terminally processed / P07305 / P10922
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 37567029
Gene end: 37568359
  
Corresponding Affymetrix probe sets: Dr.4096.1.S1_at (Zebrafish Array)   NM_199552_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000056285
NCBI entrez gene - 321618     See in Manteia.
RefSeq - NM_199552
RefSeq Peptide - NP_955846
swissprot - Q6NYV3
ZFIN ID - ZDB-GENE-030131-337
Ensembl - ENSDARG00000038559
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H1F0ENSGALG00000044240Gallus gallus
 H1F0ENSG00000189060Homo sapiens
 H1f0ENSMUSG00000096210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005818  Linker histone H1/H5, domain H15
 IPR005819  Histone H5
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of DNA fragmentation factor
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000069912 hmga2 / high mobility group AT-hook 2 / P52926* / P52927*  / reaction
 ENSDARG00000013434 hira / histone cell cycle regulator a / P54198* / Q61666* / Protein HIRA * / histone cell cycle regulator*  / reaction
 ENSDARG00000078781 si:ch211-161c3.6 / HMGA2* / P52926* / P52927* / high mobility group AT-hook 2*  / reaction






 

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