ENSGALG00000009864


Gallus gallus

Features
Gene ID: ENSGALG00000009864
  
Biological name :TRAF5
  
Synonyms : TNF receptor associated factor 5 / TRAF5
  
Possible biological names infered from orthology : O00463
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 22293470
Gene end: 22309604
  
Corresponding Affymetrix probe sets: Gga.5127.1.S1_s_at (Chicken Array)   GgaAffx.12475.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016021
Ensembl peptide - ENSGALP00000053973
NCBI entrez gene - 374055     See in Manteia.
RefSeq - XM_015283588
RefSeq - NM_204219
RefSeq - XM_015283586
RefSeq - XM_015283587
RefSeq - XM_015283585
RefSeq Peptide - NP_989550
swissprot - Q805B1
Ensembl - ENSGALG00000009864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 traf5ENSDARG00000017240Danio rerio
 TRAF5ENSG00000082512Homo sapiens
 Traf5ENSMUSG00000026637Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRAF3 / TNF receptor associated factor 3 / Q13114* / Q60803*ENSGALG0000001138939
TRAF2 / TNF receptor associated factor 2 / P39429* / Q12933*ENSGALG0000004283832
TRAF1 / TNF receptor associated factor 1 / P39428* / Q13077*ENSGALG0000000158331
TRAF6 / TNF receptor associated factor 6 / P70196* / Q9Y4K3*ENSGALG0000000793224
TRAF4 / TNF receptor associated factor 4 / Q61382* / Q9BUZ4*ENSGALG0000000398724


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001841  Zinc finger, RING-type
 IPR002083  MATH/TRAF domain
 IPR008974  TRAF-like
 IPR012227  TNF receptor-associated factor TRAF
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR027130  TNF receptor-associated factor 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0031996 thioesterase binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr