ENSGALG00000001583


Gallus gallus

Features
Gene ID: ENSGALG00000001583
  
Biological name :TRAF1
  
Synonyms : TNF receptor associated factor 1 / TRAF1
  
Possible biological names infered from orthology : P39428 / Q13077
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 8783105
Gene end: 8792615
  
Corresponding Affymetrix probe sets: GgaAffx.1027.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002401
NCBI entrez gene - 417123     See in Manteia.
RefSeq - XM_004945994
RefSeq - XM_415406
RefSeq - XM_015279819
RefSeq - XM_015279820
swissprot - F1NLM1
Ensembl - ENSGALG00000001583
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 traf1ENSDARG00000069482Danio rerio
 TRAF1ENSG00000056558Homo sapiens
 Traf1ENSMUSG00000026875Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRAF2 / TNF receptor associated factor 2 / P39429* / Q12933*ENSGALG0000004283836
TRAF5 / TNF receptor associated factor 5 / O00463*ENSGALG0000000986431
TRAF3 / TNF receptor associated factor 3 / Q13114* / Q60803*ENSGALG0000001138928
TRAF6 / TNF receptor associated factor 6 / P70196* / Q9Y4K3*ENSGALG0000000793221
TRAF4 / TNF receptor associated factor 4 / Q61382* / Q9BUZ4*ENSGALG0000000398720


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001841  Zinc finger, RING-type
 IPR002083  MATH/TRAF domain
 IPR008974  TRAF-like
 IPR012227  TNF receptor-associated factor TRAF
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR027136  TNF receptor-associated factor 1
 IPR032070  TNF receptor-associated factor, BIRC3 binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:2001236 regulation of extrinsic apoptotic signaling pathway IEA
 molecular_functionGO:0005164 tumor necrosis factor receptor binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0031996 thioesterase binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TNFR1 signaling
TNFR1-induced NFkappaB signaling pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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