ENSGALG00000010939


Gallus gallus

Features
Gene ID: ENSGALG00000010939
  
Biological name :LIN7A
  
Synonyms : LIN7A / lin-7 homolog A, crumbs cell polarity complex component
  
Possible biological names infered from orthology : lin-7 homolog A (C. elegans) / O14910 / Q8JZS0
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 40029520
Gene end: 40056169
  
Corresponding Affymetrix probe sets: GgaAffx.23387.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017782
NCBI entrez gene - 417874     See in Manteia.
RefSeq - XM_416117
swissprot - F1NSL3
Ensembl - ENSGALG00000010939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lin7aENSDARG00000013414Danio rerio
 LIN7AENSG00000111052Homo sapiens
 Lin7aENSMUSG00000019906Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIN7C / Q5F425 / Protein lin-7 homolog C / C * / Q9NUP9* / O88952* / lin-7 homolog C, crumbs cell polarity complex component*ENSGALG0000001217074
SNTB1 / beta-1-syntrophin / Q13884* / Q99L88* / syntrophin beta 1*ENSGALG0000003452827
GOPC* / Q8BH60* / Q9HD26* / AL132671.2* / golgi associated PDZ and coiled-coil motif containing*ENSGALG0000001490226
SNTB2 / syntrophin beta 2 / Q13425* / Q61235* / syntrophin, basic 2*ENSGALG0000002748226
SNTA1 / syntrophin alpha 1 / Q13424* / Q61234* / Alpha-1-syntrophin *ENSGALG0000002969426
SNTG1 / syntrophin gamma 1 / Q9NSN8* / gamma-1-syntrophin isoform 3 *ENSGALG0000001524821
SNTG2 / syntrophin gamma 2 / Q925E0* / Q9NY99* / Gamma-2-syntrophin *ENSGALG0000001636721


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR004172  L27 domain
 IPR014775  L27 domain, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0007269 neurotransmitter secretion IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0045199 maintenance of epithelial cell apical/basal polarity IBA
 biological_processGO:0048489 synaptic vesicle transport IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:1903361 protein localization to basolateral plasma membrane IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:0097025 MPP7-DLG1-LIN7 complex IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0097016 L27 domain binding IEA


Pathways (from Reactome)
Pathway description
Dopamine Neurotransmitter Release Cycle


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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