ENSGALG00000012170


Gallus gallus

Features
Gene ID: ENSGALG00000012170
  
Biological name :LIN7C
  
Synonyms : LIN7C / Protein lin-7 homolog C / Q5F425
  
Possible biological names infered from orthology : C / lin-7 homolog C, crumbs cell polarity complex component / O88952 / Q9NUP9
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 3672786
Gene end: 3685304
  
Corresponding Affymetrix probe sets: Gga.4601.1.S1_at (Chicken Array)   GgaAffx.7717.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061465
Ensembl peptide - ENSGALP00000039371
NCBI entrez gene - 421608     See in Manteia.
RefSeq - XM_015286170
RefSeq - NM_001031067
RefSeq - XM_015286169
RefSeq Peptide - NP_001026238
swissprot - Q5F425
swissprot - A0A1L1RRM7
Ensembl - ENSGALG00000012170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN7CENSG00000148943Homo sapiens
 C ENSMUSG00000027162Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIN7A / lin-7 homolog A, crumbs cell polarity complex component / O14910* / Q8JZS0* / lin-7 homolog A (C. elegans)*ENSGALG0000001093978
SNTB1 / beta-1-syntrophin / Q13884* / Q99L88* / syntrophin beta 1*ENSGALG0000003452828
GOPC* / Q8BH60* / Q9HD26* / AL132671.2* / golgi associated PDZ and coiled-coil motif containing*ENSGALG0000001490228
SNTB2 / syntrophin beta 2 / Q13425* / Q61235* / syntrophin, basic 2*ENSGALG0000002748226
SNTA1 / syntrophin alpha 1 / Q13424* / Q61234* / Alpha-1-syntrophin *ENSGALG0000002969425
SNTG1 / syntrophin gamma 1 / Q9NSN8* / gamma-1-syntrophin isoform 3 *ENSGALG0000001524821
SNTG2 / syntrophin gamma 2 / Q925E0* / Q9NY99* / Gamma-2-syntrophin *ENSGALG0000001636721


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR004172  L27 domain
 IPR014775  L27 domain, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002011 morphogenesis of an epithelial sheet IEA
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0007269 neurotransmitter secretion IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0045199 maintenance of epithelial cell apical/basal polarity IBA
 biological_processGO:1903361 protein localization to basolateral plasma membrane IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IBA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0097025 MPP7-DLG1-LIN7 complex IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008092 cytoskeletal protein binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0097016 L27 domain binding IEA


Pathways (from Reactome)
Pathway description
Dopamine Neurotransmitter Release Cycle


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000042400 CASK / calcium/calmodulin dependent serine protein kinase / O14936* / O70589* / Peripheral plasma membrane protein CASK *  / complex / reaction






 

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