ENSGALG00000013400


Gallus gallus

Features
Gene ID: ENSGALG00000013400
  
Biological name :PDCD6
  
Synonyms : PDCD6 / programmed cell death 6
  
Possible biological names infered from orthology : O75340 / P12815 / Programmed cell death protein 6
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 89230899
Gene end: 89237386
  
Corresponding Affymetrix probe sets: Gga.10151.1.S1_at (Chicken Array)   Gga.10151.1.S1_s_at (Chicken Array)   Gga.12593.1.A1_at (Chicken Array)   Gga.12593.1.S1_at (Chicken Array)   Gga.5891.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021816
Ensembl peptide - ENSGALP00000061683
Ensembl peptide - ENSGALP00000046946
NCBI entrez gene - 420988     See in Manteia.
RefSeq - XM_004935180
RefSeq - XM_419075
swissprot - A0A1L1RSA2
swissprot - A0A1D5P2P8
swissprot - F1NHD8
Ensembl - ENSGALG00000013400
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdcd6ENSDARG00000005220Danio rerio
 PDCD6ENSG00000249915Homo sapiens
 Pdcd6ENSMUSG00000021576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PEF1 / penta-EF-hand domain containing 1 / Q8BFY6* / Q9UBV8* / Peflin *ENSGALG0000004051942
SRI / sorcin / P30626* / Q6P069*ENSGALG0000000898536
CAPNS2 / calpain small subunit 2 / Q96L46* / Q9D7J7*ENSGALG0000004505025
ENSGALG0000001113621


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001938 positive regulation of endothelial cell proliferation IEA
 biological_processGO:0006508 proteolysis IBA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0010595 positive regulation of endothelial cell migration IEA
 biological_processGO:0014029 neural crest formation IEA
 biological_processGO:0014032 neural crest cell development IEA
 biological_processGO:0030948 negative regulation of vascular endothelial growth factor receptor signaling pathway IEA
 biological_processGO:0032007 negative regulation of TOR signaling IEA
 biological_processGO:0034605 cellular response to heat IEA
 biological_processGO:0036324 vascular endothelial growth factor receptor-2 signaling pathway IEA
 biological_processGO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045766 positive regulation of angiogenesis IEA
 biological_processGO:0048208 COPII vesicle coating IEA
 biological_processGO:0051592 response to calcium ion IEA
 biological_processGO:0051898 negative regulation of protein kinase B signaling IEA
 biological_processGO:1902527 positive regulation of protein monoubiquitination IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031463 Cul3-RING ubiquitin ligase complex IEA
 cellular_componentGO:0070971 endoplasmic reticulum exit site IEA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043495 protein membrane anchor IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0048306 calcium-dependent protein binding IEA
 molecular_functionGO:0060090 molecular adaptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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