ENSDARG00000005220


Danio rerio

Features
Gene ID: ENSDARG00000005220
  
Biological name :pdcd6
  
Synonyms : pdcd6 / programmed cell death 6
  
Possible biological names infered from orthology : O75340 / P12815 / Programmed cell death protein 6
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 12629649
Gene end: 12689571
  
Corresponding Affymetrix probe sets: Dr.13544.1.S1_at (Zebrafish Array)   NM_200950_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009990
NCBI entrez gene - 393925     See in Manteia.
RefSeq - NM_200950
RefSeq Peptide - NP_957244
swissprot - Q7T3D5
ZFIN ID - ZDB-GENE-040426-1307
Ensembl - ENSDARG00000005220
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDCD6ENSGALG00000013400Gallus gallus
 PDCD6ENSG00000249915Homo sapiens
 Pdcd6ENSMUSG00000021576Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pef1 / Q6DC93 / penta-EF-hand domain containing 1 / Q8BFY6* / Q9UBV8* / Peflin *ENSDARG0000002398935
sri / sorcin / P30626* / Q6P069*ENSDARG0000005859333
zgc:92027 / GCA* / P28676* / Q8VC88* / grancalcin*ENSDARG0000002018730
capns1a / calpain, small subunit 1 a / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000003532928
capns1b / calpain, small subunit 1 b / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000001380426


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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