ENSDARG00000035329


Danio rerio

Features
Gene ID: ENSDARG00000035329
  
Biological name :capns1a
  
Synonyms : calpain, small subunit 1 a / capns1a
  
Possible biological names infered from orthology : calpain small subunit 1 / calpain small subunit 2 / CAPNS1 / CAPNS2 / P04632 / Q96L46 / Q9D7J7
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 36654817
Gene end: 36665694
  
Corresponding Affymetrix probe sets: Dr.2503.2.S1_at (Zebrafish Array)   NM_001017899_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020352
Ensembl peptide - ENSDARP00000107632
Ensembl peptide - ENSDARP00000119693
NCBI entrez gene - 550598     See in Manteia.
RefSeq - NM_001017899
RefSeq Peptide - NP_001017899
swissprot - Q1LYC9
swissprot - Q568A3
ZFIN ID - ZDB-GENE-030113-3
Ensembl - ENSDARG00000035329
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CAPNS2ENSGALG00000045050Gallus gallus
 CAPNS1ENSG00000126247Homo sapiens
 CAPNS2ENSG00000256812Homo sapiens
 Capns1ENSMUSG00000001794Mus musculus
 Capns2ENSMUSG00000078144Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
capns1b / calpain, small subunit 1 b / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000001380481
zgc:92027 / GCA* / P28676* / Q8VC88* / grancalcin*ENSDARG0000002018727
sri / sorcin / P30626* / Q6P069*ENSDARG0000005859325
pdcd6 / programmed cell death 6 / O75340* / P12815* / Programmed cell death protein 6 *ENSDARG0000000522024
pef1 / Q6DC93 / penta-EF-hand domain containing 1 / Q8BFY6* / Q9UBV8* / Peflin *ENSDARG0000002398922


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000034211 zgc:92480 / CAPN2* / P17655* / calpain 2*  / complex
 ENSDARG00000055338 CAPN1 / si:dkeyp-50d11.2 / O35350* / P07384* / calpain 1* / Calpain-1 catalytic subunit *  / complex






 

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