ENSDARG00000020187


Danio rerio

Features
Gene ID: ENSDARG00000020187
  
Biological name :zgc:92027
  
Synonyms : zgc:92027
  
Possible biological names infered from orthology : GCA / grancalcin / P28676 / Q8VC88
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 13993500
Gene end: 14010554
  
Corresponding Affymetrix probe sets: Dr.5366.1.A1_at (Zebrafish Array)   Dr.5366.2.S1_at (Zebrafish Array)   NM_001005585_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000024892
Ensembl peptide - ENSDARP00000149755
NCBI entrez gene - 449543     See in Manteia.
RefSeq - NM_001005585
RefSeq Peptide - NP_001005585
swissprot - F1QMK6
ZFIN ID - ZDB-GENE-040930-3
Ensembl - ENSDARG00000020187
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GCAENSG00000115271Homo sapiens
 GcaENSMUSG00000026893Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sri / sorcin / P30626* / Q6P069*ENSDARG0000005859361
pef1 / Q6DC93 / penta-EF-hand domain containing 1 / Q8BFY6* / Q9UBV8* / Peflin *ENSDARG0000002398931
capns1a / calpain, small subunit 1 a / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000003532928
pdcd6 / programmed cell death 6 / O75340* / P12815* / Programmed cell death protein 6 *ENSDARG0000000522027
capns1b / calpain, small subunit 1 b / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000001380427


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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