ENSDARG00000023989


Danio rerio

Features
Gene ID: ENSDARG00000023989
  
Biological name :pef1
  
Synonyms : pef1 / penta-EF-hand domain containing 1 / Q6DC93
  
Possible biological names infered from orthology : Peflin / Q8BFY6 / Q9UBV8
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 37120491
Gene end: 37134211
  
Corresponding Affymetrix probe sets: Dr.2661.1.A1_at (Zebrafish Array)   NM_001003643_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000033243
NCBI entrez gene - 445249     See in Manteia.
RefSeq - NM_001003643
RefSeq Peptide - NP_001003643
swissprot - Q6DC93
ZFIN ID - ZDB-GENE-040801-259
Ensembl - ENSDARG00000023989
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PEF1ENSGALG00000040519Gallus gallus
 PEF1ENSG00000162517Homo sapiens
 Pef1ENSMUSG00000028779Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sri / sorcin / P30626* / Q6P069*ENSDARG0000005859324
pdcd6 / programmed cell death 6 / O75340* / P12815* / Programmed cell death protein 6 *ENSDARG0000000522024
zgc:92027 / GCA* / P28676* / Q8VC88* / grancalcin*ENSDARG0000002018723
capns1b / calpain, small subunit 1 b / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000001380418
capns1a / calpain, small subunit 1 a / Q9D7J7* / CAPNS1* / CAPNS2* / P04632* / Q96L46* / calpain small subunit 2* / calpain small subunit 1*ENSDARG0000003532917


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IBA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport ISS
 biological_processGO:0014029 neural crest formation ISS
 biological_processGO:0014032 neural crest cell development ISS
 biological_processGO:0048208 COPII vesicle coating ISS
 biological_processGO:1902527 positive regulation of protein monoubiquitination ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031463 Cul3-RING ubiquitin ligase complex ISS
 molecular_functionGO:0004198 calcium-dependent cysteine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0060090 molecular adaptor activity ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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