ENSGALG00000013454


Gallus gallus

Features
Gene ID: ENSGALG00000013454
  
Biological name :HOXB1
  
Synonyms : HOXB1
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 27
Strand: 1
Band:
Gene start: 3879443
Gene end: 3882191
  
Corresponding Affymetrix probe sets: Gga.18352.1.S1_at (Chicken Array)   Gga.5066.1.A1_at (Chicken Array)   Gga.5066.1.S1_at (Chicken Array)   Gga.533.1.S1_x_at (Chicken Array)   GgaAffx.24204.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021895
NCBI entrez gene - 395900     See in Manteia.
RefSeq - NM_001080859
RefSeq Peptide - NP_001074328
swissprot - F1NH11
Ensembl - ENSGALG00000013454
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxb1aENSDARG00000008174Danio rerio
 hoxb1bENSDARG00000054033Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA1 / homeobox A1 / P49639*ENSGALG0000002809545
HOXB3 / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSGALG0000004321922
HOXA2 / Q08727 / Homeobox protein Hox-A2 / O43364* / P31245* / homeobox A2*ENSGALG0000004052121
HOXD3 / homeobox D3 / P09027* / P31249*ENSGALG0000002342021
PDX1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSGALG0000003845420
HOXA3 / homeobox A3 / O43365* / P02831* / Homeobox protein Hox-A3 *ENSGALG0000002792520
GSX2* / P31316* / Q9BZM3* / GS homeobox 2*ENSGALG0000003594317
HOXB2 / homeobox B2 / P0C1T1* / P14652* / Homeobox protein Hox-B2 *ENSGALG0000002577417
GSX1 / GS homeobox 1 / P31315* / Q9H4S2*ENSGALG0000002977916


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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