ENSGALG00000028095


Gallus gallus

Features
Gene ID: ENSGALG00000028095
  
Biological name :HOXA1
  
Synonyms : homeobox A1 / HOXA1
  
Possible biological names infered from orthology : P49639
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 32634688
Gene end: 32636037
  
Corresponding Affymetrix probe sets: Gga.5134.1.A1_at (Chicken Array)   Gga.5134.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000041535
Ensembl peptide - ENSGALP00000049912
NCBI entrez gene - 374051     See in Manteia.
RefSeq - XM_003640697
swissprot - A0A1D5PAZ5
swissprot - R4GHI8
Ensembl - ENSGALG00000028095
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxa1aENSDARG00000104307Danio rerio
 HOXA1ENSG00000105991Homo sapiens
 Hoxa1ENSMUSG00000029844Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXB1ENSGALG0000001345443
HOXD3 / homeobox D3 / P09027* / P31249*ENSGALG0000002342024
HOXB3 / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSGALG0000004321922
HOXA3 / homeobox A3 / O43365* / P02831* / Homeobox protein Hox-A3 *ENSGALG0000002792522
HOXA2 / Q08727 / Homeobox protein Hox-A2 / O43364* / P31245* / homeobox A2*ENSGALG0000004052120
PDX1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSGALG0000003845418
GSX2* / P31316* / Q9BZM3* / GS homeobox 2*ENSGALG0000003594318
GSX1 / GS homeobox 1 / P31315* / Q9H4S2*ENSGALG0000002977918
HOXB2 / homeobox B2 / P0C1T1* / P14652* / Homeobox protein Hox-B2 *ENSGALG0000002577416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007634 optokinetic behavior IEA
 biological_processGO:0009653 anatomical structure morphogenesis IEA
 biological_processGO:0021599 abducens nerve formation IEA
 biological_processGO:0042473 outer ear morphogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0048844 artery morphogenesis IEA
 biological_processGO:0050795 regulation of behavior IEA
 biological_processGO:0050890 cognition IEA
 biological_processGO:0050905 neuromuscular process IEA
 biological_processGO:0060840 artery development IEA
 biological_processGO:0060876 semicircular canal formation IEA
 biological_processGO:0090102 cochlea development IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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