ENSGALG00000023420


Gallus gallus

Features
Gene ID: ENSGALG00000023420
  
Biological name :HOXD3
  
Synonyms : homeobox D3 / HOXD3
  
Possible biological names infered from orthology : P09027 / P31249
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 16326992
Gene end: 16331601
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000037900
NCBI entrez gene - 431212     See in Manteia.
RefSeq - XM_015289587
RefSeq - XM_015289588
RefSeq - XM_015289589
RefSeq - XM_015289590
RefSeq - XM_015289591
RefSeq - XM_015289592
RefSeq - XM_428765
RefSeq - XM_015289586
swissprot - E1BZG3
Ensembl - ENSGALG00000023420
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxd3aENSDARG00000059280Danio rerio
 HOXD3ENSG00000128652Homo sapiens
 Hoxd3ENSMUSG00000079277Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA3 / homeobox A3 / O43365* / P02831* / Homeobox protein Hox-A3 *ENSGALG0000002792556
HOXB3 / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSGALG0000004321953
HOXA2 / Q08727 / Homeobox protein Hox-A2 / O43364* / P31245* / homeobox A2*ENSGALG0000004052121
HOXA1 / homeobox A1 / P49639*ENSGALG0000002809519
PDX1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSGALG0000003845417
HOXB2 / homeobox B2 / P0C1T1* / P14652* / Homeobox protein Hox-B2 *ENSGALG0000002577417
HOXB1ENSGALG0000001345416
GSX1 / GS homeobox 1 / P31315* / Q9H4S2*ENSGALG0000002977915
GSX2* / P31316* / Q9BZM3* / GS homeobox 2*ENSGALG0000003594314


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR025281  Domain of unknown function DUF4074


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0021615 glossopharyngeal nerve morphogenesis IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0051216 cartilage development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016235 aggresome IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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