ENSDARG00000059280


Danio rerio

Features
Gene ID: ENSDARG00000059280
  
Biological name :hoxd3a
  
Synonyms : homeobox D3a / hoxd3a / O42370
  
Possible biological names infered from orthology : homeobox D3 / HOXD3 / P09027 / P31249
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 1937049
Gene end: 1959917
  
Corresponding Affymetrix probe sets: Dr.21032.1.A1_at (Zebrafish Array)   Dr.21032.1.S1_at (Zebrafish Array)   Dr.4964.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093704
Ensembl peptide - ENSDARP00000120633
Ensembl peptide - ENSDARP00000156094
NCBI entrez gene - 30349     See in Manteia.
RefSeq - NM_131125
RefSeq - XM_021478602
RefSeq Peptide - NP_571200
swissprot - O42370
ZFIN ID - ZDB-GENE-990415-120
Ensembl - ENSDARG00000059280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXD3ENSGALG00000023420Gallus gallus
 HOXD3ENSG00000128652Homo sapiens
 Hoxd3ENSMUSG00000079277Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926356
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386248
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017522
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303121
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430717
hoxc3a / homeobox C3aENSDARG0000007033917
hoxb1a / homeobox B1aENSDARG0000000817416
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277916
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573514
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033714
hoxb1b / homeobox B1bENSDARG0000005403314
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332213


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR025281  Domain of unknown function DUF4074


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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