ENSDARG00000070337


Danio rerio

Features
Gene ID: ENSDARG00000070337
  
Biological name :hoxc1a
  
Synonyms : homeobox C1a / hoxc1a / Q98SH9
  
Possible biological names infered from orthology : homeobox D1 / Homeobox protein Hox-D1 / HOXD1 / Q01822 / Q9GZZ0
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36178104
Gene end: 36190988
  
Corresponding Affymetrix probe sets: Dr.21553.1.A1_at (Zebrafish Array)   Dr.8192.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093905
NCBI entrez gene - 58046     See in Manteia.
swissprot - B3DHA1
swissprot - Q98SH9
ZFIN ID - ZDB-GENE-000822-2
Ensembl - ENSDARG00000070337
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXD1ENSG00000128645Homo sapiens
 Hoxd1ENSMUSG00000042448Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430729
hoxb1a / homeobox B1aENSDARG0000000817428
hoxb1b / homeobox B1bENSDARG0000005403324
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926319
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303119
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928018
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017518
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386218
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277916
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573515
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332215
hoxc3a / homeobox C3aENSDARG0000007033914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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