ENSDARG00000103862


Danio rerio

Features
Gene ID: ENSDARG00000103862
  
Biological name :hoxa3a
  
Synonyms : homeobox A3a / hoxa3a / hoxa4a / Q8AWZ2 / Q9PWL5
  
Possible biological names infered from orthology : homeobox A3 / Homeobox protein Hox-A3 / HOXA3 / O43365 / P02831
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 19754950
Gene end: 19780245
  
Corresponding Affymetrix probe sets: Dr.21031.1.S1_at (Zebrafish Array)   Dr.24774.1.S1_at (Zebrafish Array)   Dr.24774.1.S2_at (Zebrafish Array)   NM_131535_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138653
Ensembl peptide - ENSDARP00000152861
Ensembl peptide - ENSDARP00000152675
Ensembl peptide - ENSDARP00000139302
Ensembl peptide - ENSDARP00000139163
Ensembl peptide - ENSDARP00000130226
Ensembl peptide - ENSDARP00000133275
Ensembl peptide - ENSDARP00000134767
Ensembl peptide - ENSDARP00000136820
NCBI entrez gene - 58050     See in Manteia.
RefSeq - NM_131535
RefSeq Peptide - NP_571610
swissprot - A0A0N4STW5
swissprot - A0A0J9YJH1
swissprot - Q8AWZ2
swissprot - Q9PWL5
swissprot - A0A0N4SUA4
swissprot - A0A0N4SU55
ZFIN ID - ZDB-GENE-000823-3
ZFIN ID - ZDB-GENE-000823-4
Ensembl - ENSDARG00000103862
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA3ENSGALG00000027925Gallus gallus
 HOXA3ENSG00000105997Homo sapiens
 Hoxa3ENSMUSG00000079560Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926351
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928046
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017525
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303122
hoxc3a / homeobox C3aENSDARG0000007033919
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430716
hoxb1a / homeobox B1aENSDARG0000000817415
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277915
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573513
hoxb1b / homeobox B1bENSDARG0000005403313
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033713
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa
 IPR025281  Domain of unknown function DUF4074


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr