ENSDARG00000035735


Danio rerio

Features
Gene ID: ENSDARG00000035735
  
Biological name :gsx1
  
Synonyms : GS homeobox 1 / gsx1
  
Possible biological names infered from orthology : P31315 / Q9H4S2
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 67909644
Gene end: 67911111
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000051832
NCBI entrez gene - 449875     See in Manteia.
RefSeq - NM_001012251
RefSeq Peptide - NP_001012251
swissprot - Q5QHS3
ZFIN ID - ZDB-GENE-041008-135
Ensembl - ENSDARG00000035735
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GSX1ENSGALG00000029779Gallus gallus
 GSX1ENSG00000169840Homo sapiens
 Gsx1ENSMUSG00000053129Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332247
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017527
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303126
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926325
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277923
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386223
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928023
hoxc3a / homeobox C3aENSDARG0000007033922
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430721
hoxb1a / homeobox B1aENSDARG0000000817420
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033719
hoxb1b / homeobox B1bENSDARG0000005403318


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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