ENSDARG00000000175


Danio rerio

Features
Gene ID: ENSDARG00000000175
  
Biological name :hoxb2a
  
Synonyms : homeobox B2a / hoxb2a
  
Possible biological names infered from orthology : homeobox A2 / Homeobox protein Hox-A2 / HOXA2 / O43364 / P31245
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 23752150
Gene end: 23754831
  
Corresponding Affymetrix probe sets: Dr.10626.1.A1_at (Zebrafish Array)   Dr.20962.1.S1_at (Zebrafish Array)   NM_131116_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118498
NCBI entrez gene - 30338     See in Manteia.
RefSeq - NM_131116
RefSeq Peptide - NP_571191
swissprot - F1QMG2
ZFIN ID - ZDB-GENE-990415-103
Ensembl - ENSDARG00000000175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA2ENSGALG00000040521Gallus gallus
 HOXA2ENSG00000105996Homo sapiens
 Hoxa2ENSMUSG00000014704Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303142
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926325
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386225
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928022
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277916
hoxc3a / homeobox C3aENSDARG0000007033916
hoxb1a / homeobox B1aENSDARG0000000817416
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573516
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430716
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332215
hoxb1b / homeobox B1bENSDARG0000005403315
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033713


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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