ENSDARG00000054033


Danio rerio

Features
Gene ID: ENSDARG00000054033
  
Biological name :hoxb1b
  
Synonyms : homeobox B1b / hoxb1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 27141140
Gene end: 27142834
  
Corresponding Affymetrix probe sets: Dr.74.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000122259
NCBI entrez gene - 30374     See in Manteia.
RefSeq - NM_131142
RefSeq Peptide - NP_571217
swissprot - E9QHF1
ZFIN ID - ZDB-GENE-980526-290
Ensembl - ENSDARG00000054033
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXB1ENSGALG00000013454Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxb1a / homeobox B1aENSDARG0000000817446
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430742
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033731
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017528
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303126
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277924
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386224
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926324
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928024
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573519
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332218
hoxc3a / homeobox C3aENSDARG0000007033918


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain deformed , abnormal
hindbrain cell disoriented , abnormal
hindbrain neuron mislocalised , abnormal
hindbrain central canal increased amount , abnormal
hindbrain decreased size , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
Show

 ZFA:0000069 rhombomere 6 rhombomere 6 decreased size , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle morphology , abnormal
fourth ventricle separated from fourth ventricle , abnormal
Show

 ZFA:0000206 facial nerve motor nucleus facial nerve motor nucleus motor neuron migration decreased process quality , abnormal
Show

 ZFA:0000948 rhombomere 3 rhombomere 3 establishment of mitotic spindle orientation process quality , abnormal
rhombomere 3 establishment of mitotic spindle orientation increased variability , abnormal
rhombomere 3 increased size , abnormal
Show

 ZFA:0001032 rhombomere 4 rhombomere 4 establishment of mitotic spindle orientation process quality , abnormal
rhombomere 4 establishment of mitotic spindle orientation increased variability , abnormal
rhombomere 4 decreased size , abnormal
Show

 ZFA:0009149 Mauthner neuron Mauthner neuron absent , abnormal
Mauthner neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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