ENSDARG00000023031


Danio rerio

Features
Gene ID: ENSDARG00000023031
  
Biological name :hoxa2b
  
Synonyms : homeobox A2b / hoxa2b
  
Possible biological names infered from orthology : homeobox A2 / Homeobox protein Hox-A2 / HOXA2 / O43364 / P31245
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 20926673
Gene end: 20929183
  
Corresponding Affymetrix probe sets: Dr.5772.1.S1_at (Zebrafish Array)   NM_131106_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000023072
NCBI entrez gene - 30325     See in Manteia.
RefSeq - NM_131106
RefSeq Peptide - NP_571181
swissprot - B3DG99
ZFIN ID - ZDB-GENE-990415-98
Ensembl - ENSDARG00000023031
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA2ENSGALG00000040521Gallus gallus
 HOXA2ENSG00000105996Homo sapiens
 Hoxa2ENSMUSG00000014704Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017548
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926327
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386225
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928023
hoxc3a / homeobox C3aENSDARG0000007033919
hoxb1a / homeobox B1aENSDARG0000000817418
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430718
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277918
hoxb1b / homeobox B1bENSDARG0000005403317
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332217
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573517
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001611 pharyngeal arch 2 pharyngeal arch 2 physical object quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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