ENSDARG00000043322


Danio rerio

Features
Gene ID: ENSDARG00000043322
  
Biological name :gsx2
  
Synonyms : GS homeobox 2 / gsx2
  
Possible biological names infered from orthology : P31316 / Q9BZM3
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 22483048
Gene end: 22484621
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000063600
NCBI entrez gene - 561076     See in Manteia.
RefSeq - NM_001025512
RefSeq Peptide - NP_001020683
swissprot - Q1RMA3
ZFIN ID - ZDB-GENE-041001-114
Ensembl - ENSDARG00000043322
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000035943Gallus gallus
 GSX2ENSG00000180613Homo sapiens
 Gsx2ENSMUSG00000035946Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573548
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017525
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303125
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277925
O42368 / hoxb3a / homeobox B3a / HOXB3* / P09026* / P14651* / homeobox B3* / Homeobox protein Hox-B3 *ENSDARG0000002926323
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928022
hoxc3a / homeobox C3aENSDARG0000007033922
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386221
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430720
hoxb1a / homeobox B1aENSDARG0000000817419
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033719
hoxb1b / homeobox B1bENSDARG0000005403317


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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