ENSG00000180613


Homo sapiens

Features
Gene ID: ENSG00000180613
  
Biological name :GSX2
  
Synonyms : GS homeobox 2 / GSX2 / Q9BZM3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q12
Gene start: 54099523
Gene end: 54102505
  
Corresponding Affymetrix probe sets: 230338_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000319118
Ensembl peptide - ENSP00000483522
Ensembl peptide - ENSP00000422213
NCBI entrez gene - 170825     See in Manteia.
OMIM - 616253
RefSeq - NM_133267
RefSeq Peptide - NP_573574
swissprot - D6R903
swissprot - Q9BZM3
Ensembl - ENSG00000180613
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gsx2ENSDARG00000043322Danio rerio
 ENSGALG00000035943Gallus gallus
 Gsx2ENSMUSG00000035946Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GSX1 / Q9H4S2 / GS homeobox 1ENSG0000016984042
PDX1 / P52945 / pancreatic and duodenal homeobox 1ENSG0000013951525
HOXB2 / P14652 / homeobox B2ENSG0000017391722
HOXA3 / O43365 / homeobox A3ENSG0000010599721
HOXA2 / O43364 / homeobox A2ENSG0000010599621
HOXB3 / P14651 / homeobox B3ENSG0000012009321
HOXB1 / P14653 / homeobox B1ENSG0000012009421
HOXD3 / P31249 / homeobox D3ENSG0000012865220
HOXD1 / Q9GZZ0 / homeobox D1ENSG0000012864519
HOXA1 / P49639 / homeobox A1ENSG0000010599117


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002087 regulation of respiratory gaseous exchange by neurological system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021544 subpallium development IEA
 biological_processGO:0021575 hindbrain morphogenesis IEA
 biological_processGO:0021798 forebrain dorsal/ventral pattern formation IEA
 biological_processGO:0021889 olfactory bulb interneuron differentiation IEA
 biological_processGO:0021978 telencephalon regionalization IEA
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0045747 positive regulation of Notch signaling pathway IEA
 biological_processGO:0048663 neuron fate commitment IEA
 biological_processGO:0048665 neuron fate specification IEA
 biological_processGO:0048714 positive regulation of oligodendrocyte differentiation IEA
 biological_processGO:0048853 forebrain morphogenesis IEA
 biological_processGO:0060163 subpallium neuron fate commitment IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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