ENSG00000120094


Homo sapiens

Features
Gene ID: ENSG00000120094
  
Biological name :HOXB1
  
Synonyms : homeobox B1 / HOXB1 / P14653
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q21.32
Gene start: 48528526
Gene end: 48531001
  
Corresponding Affymetrix probe sets: 208224_at (Human Genome U133 Plus 2.0 Array)   243811_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494703
Ensembl peptide - ENSP00000355140
Ensembl peptide - ENSP00000459066
NCBI entrez gene - 3211     See in Manteia.
OMIM - 142968
RefSeq - NM_002144
RefSeq Peptide - NP_002135
swissprot - P14653
Ensembl - ENSG00000120094
  
Related genetic diseases (OMIM): 614744 - Facial paresis, hereditary congenital, 3, 614744

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Hoxb1ENSMUSG00000018973Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA1 / P49639 / homeobox A1ENSG0000010599150
HOXD1 / Q9GZZ0 / homeobox D1ENSG0000012864539
HOXA3 / O43365 / homeobox A3ENSG0000010599726
HOXB3 / P14651 / homeobox B3ENSG0000012009326
HOXD3 / P31249 / homeobox D3ENSG0000012865225
HOXA2 / O43364 / homeobox A2ENSG0000010599624
HOXB2 / P14652 / homeobox B2ENSG0000017391724
GSX1 / Q9H4S2 / GS homeobox 1ENSG0000016984022
PDX1 / P52945 / pancreatic and duodenal homeobox 1ENSG0000013951522
GSX2 / Q9BZM3 / GS homeobox 2ENSG0000018061321


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development NAS
 biological_processGO:0007389 pattern specification process TAS
 biological_processGO:0009653 anatomical structure morphogenesis IGI
 biological_processGO:0009952 anterior/posterior pattern specification IGI
 biological_processGO:0021546 rhombomere development IDA
 biological_processGO:0021570 rhombomere 4 development IGI
 biological_processGO:0021571 rhombomere 5 development IGI
 biological_processGO:0021612 facial nerve structural organization IMP
 biological_processGO:0021754 facial nucleus development IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048646 anatomical structure formation involved in morphogenesis IGI
 biological_processGO:0048704 embryonic skeletal system morphogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of anterior HOX genes in hindbrain development during early embryogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000565 Esotropia 
Show

 HP:0003680 Nonprogressive disorder 
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
Show

 HP:0025312 Esophoria "A form of strabismus with both eyes turned inward to a relatively mild degree, usually defined as less than 10 prism diopters." []
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000143995 MEIS1 / O00470 / Meis homeobox 1  / complex
 ENSG00000160199 P55347 / PKNOX1 / PBX/knotted 1 homeobox 1  / complex
 ENSG00000185630 PBX1 / P40424 / PBX homeobox 1  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr