ENSG00000169840


Homo sapiens

Features
Gene ID: ENSG00000169840
  
Biological name :GSX1
  
Synonyms : GS homeobox 1 / GSX1 / Q9H4S2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q12.2
Gene start: 27792643
Gene end: 27794768
  
Corresponding Affymetrix probe sets: 1555676_s_at (Human Genome U133 Plus 2.0 Array)   234791_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000304331
NCBI entrez gene - 219409     See in Manteia.
OMIM - 616542
RefSeq - NM_145657
RefSeq Peptide - NP_663632
swissprot - Q9H4S2
Ensembl - ENSG00000169840
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gsx1ENSDARG00000035735Danio rerio
 GSX1ENSGALG00000029779Gallus gallus
 Gsx1ENSMUSG00000053129Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GSX2 / Q9BZM3 / GS homeobox 2ENSG0000018061348
PDX1 / P52945 / pancreatic and duodenal homeobox 1ENSG0000013951527
HOXB3 / P14651 / homeobox B3ENSG0000012009327
HOXD3 / P31249 / homeobox D3ENSG0000012865227
HOXB2 / P14652 / homeobox B2ENSG0000017391726
HOXD1 / Q9GZZ0 / homeobox D1ENSG0000012864525
HOXB1 / P14653 / homeobox B1ENSG0000012009425
HOXA3 / O43365 / homeobox A3ENSG0000010599724
HOXA2 / O43364 / homeobox A2ENSG0000010599623
HOXA1 / P49639 / homeobox A1ENSG0000010599120


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021854 hypothalamus development IEA
 biological_processGO:0021984 adenohypophysis development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048663 neuron fate commitment IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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