ENSG00000105996


Homo sapiens

Features
Gene ID: ENSG00000105996
  
Biological name :HOXA2
  
Synonyms : homeobox A2 / HOXA2 / O43364
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p15.2
Gene start: 27100354
Gene end: 27102811
  
Corresponding Affymetrix probe sets: 214457_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000222718
NCBI entrez gene - 3199     See in Manteia.
OMIM - 604685
RefSeq - NM_006735
RefSeq Peptide - NP_006726
swissprot - O43364
Ensembl - ENSG00000105996
  
Related genetic diseases (OMIM): 612290 - ?Microtia, hearing impairment, and cleft palate (AR), 612290

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxa2bENSDARG00000023031Danio rerio
 hoxb2aENSDARG00000000175Danio rerio
 HOXA2ENSGALG00000040521Gallus gallus
 Hoxa2ENSMUSG00000014704Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXB2 / P14652 / homeobox B2ENSG0000017391749
HOXB3 / P14651 / homeobox B3ENSG0000012009325
HOXA3 / O43365 / homeobox A3ENSG0000010599725
HOXD3 / P31249 / homeobox D3ENSG0000012865223
PDX1 / P52945 / pancreatic and duodenal homeobox 1ENSG0000013951523
HOXB1 / P14653 / homeobox B1ENSG0000012009419
HOXA1 / P49639 / homeobox A1ENSG0000010599119
HOXD1 / Q9GZZ0 / homeobox D1ENSG0000012864518
GSX2 / Q9BZM3 / GS homeobox 2ENSG0000018061317
GSX1 / Q9H4S2 / GS homeobox 1ENSG0000016984016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001709 cell fate determination IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007379 segment specification IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0021568 rhombomere 2 development IEA
 biological_processGO:0021569 rhombomere 3 development IEA
 biological_processGO:0021658 rhombomere 3 morphogenesis IEA
 biological_processGO:0035284 brain segmentation IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045668 negative regulation of osteoblast differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0071300 cellular response to retinoic acid IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Activation of anterior HOX genes in hindbrain development during early embryogenesis
Regulation of expression of SLITs and ROBOs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000410 Mixed hearing loss 
Show

 HP:0008551 Underdeveloped ears 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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