ENSDARG00000029263


Danio rerio

Features
Gene ID: ENSDARG00000029263
  
Biological name :hoxb3a
  
Synonyms : homeobox B3a / hoxb3a / O42368
  
Possible biological names infered from orthology : homeobox B3 / Homeobox protein Hox-B3 / HOXB3 / P09026 / P14651
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 23697997
Gene end: 23771945
  
Corresponding Affymetrix probe sets: Dr.15717.1.S1_at (Zebrafish Array)   Dr.2693.1.A1_at (Zebrafish Array)   Dr.5779.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000153325
Ensembl peptide - ENSDARP00000156821
Ensembl peptide - ENSDARP00000155326
Ensembl peptide - ENSDARP00000072928
Ensembl peptide - ENSDARP00000121974
Ensembl peptide - ENSDARP00000123220
Ensembl peptide - ENSDARP00000128207
Ensembl peptide - ENSDARP00000144466
NCBI entrez gene - 30339     See in Manteia.
swissprot - E9QE11
swissprot - E9QCP3
swissprot - O42368
ZFIN ID - ZDB-GENE-990415-104
Ensembl - ENSDARG00000029263
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXB3ENSGALG00000043219Gallus gallus
 HOXB3ENSG00000120093Homo sapiens
 Hoxb3ENSMUSG00000048763Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxd3a / O42370 / homeobox D3a / HOXD3* / P31249* / P09027* / homeobox D3*ENSDARG0000005928053
Q9PWL5 / hoxa3a / hoxa4a / Q8AWZ2 / homeobox A3a / HOXA3* / P02831* / O43365* / homeobox A3* / Homeobox protein Hox-A3 *ENSDARG0000010386250
hoxb2a / homeobox B2a / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000000017525
hoxa2b / homeobox A2b / HOXA2* / O43364* / P31245* / homeobox A2* / Homeobox protein Hox-A2 *ENSDARG0000002303124
hoxc3a / homeobox C3aENSDARG0000007033918
hoxa1a / Q98SI1 / homeobox A1a / HOXA1* / P49639* / homeobox A1*ENSDARG0000010430717
pdx1 / pancreatic and duodenal homeobox 1 / P52945* / P52946* / Pancreas/duodenum homeobox protein 1 *ENSDARG0000000277916
hoxb1a / homeobox B1aENSDARG0000000817416
gsx1 / GS homeobox 1 / P31315* / Q9H4S2*ENSDARG0000003573515
hoxc1a / Q98SH9 / homeobox C1a / HOXD1* / Q01822* / Q9GZZ0* / homeobox D1* / Homeobox protein Hox-D1 *ENSDARG0000007033714
gsx2 / GS homeobox 2 / P31316* / Q9BZM3*ENSDARG0000004332213
hoxb1b / homeobox B1bENSDARG0000005403313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR025281  Domain of unknown function DUF4074


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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