ENSGALG00000014765


Gallus gallus

Features
Gene ID: ENSGALG00000014765
  
Biological name :TRIM23
  
Synonyms : TRIM23 / tripartite motif containing 23
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM23 / P36406 / Q8BGX0
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 20588770
Gene end: 20606823
  
Corresponding Affymetrix probe sets: Gga.12603.1.S1_at (Chicken Array)   Gga.13751.1.A1_at (Chicken Array)   Gga.13751.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000023768
Ensembl peptide - ENSGALP00000057834
Ensembl peptide - ENSGALP00000052318
NCBI entrez gene - 427164     See in Manteia.
RefSeq - XM_004937283
RefSeq - XM_004937284
RefSeq - XM_424752
swissprot - E1C0E8
swissprot - A0A1D5PXY6
swissprot - A0A1D5PHN8
Ensembl - ENSGALG00000014765
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim23ENSDARG00000069420Danio rerio
 P36406ENSG00000113595Homo sapiens
 Q8BGX0ENSMUSG00000021712Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARF1 / ADP-ribosylation factor 1 / P84077*ENSGALG0000000539315
ARF4 / ADP ribosylation factor 4 / P18085* / P61750*ENSGALG0000000562214
ARF6 / P26990 / ADP-ribosylation factor 6 / P62330* / P62331*ENSGALG0000002694413
ARF5 / ADP ribosylation factor 5 / P84084* / P84085*ENSGALG0000004347613
ARL3 / ADP ribosylation factor like GTPase 3 / P36405* / Q9WUL7* / ADP-ribosylation factor-like protein 3 *ENSGALG0000000804911
ENSGALG0000000313410
ARL14 / ADP ribosylation factor like GTPase 14 / Q8N4G2*ENSGALG0000004362310
ARL11 / ADP ribosylation factor like GTPase 11 / Q6P3A9* / Q969Q4* / ADP-ribosylation factor-like protein 11 *ENSGALG0000002273310
ARL15 / ADP ribosylation factor like GTPase 15 / Q8BGR6* / Q9NXU5* / ADP-ribosylation factor-like protein 15 *ENSGALG000000149118
ARL8BLENSGALG000000315277
ARL8B / ADP ribosylation factor like GTPase 8B / Q9CQW2* / Q9NVJ2* / ADP-ribosylation factor-like protein 8B *ENSGALG000000083147
ARL8A / ADP-ribosylation factor-like protein 8A / Q8VEH3* / Q96BM9* / ADP ribosylation factor like GTPase 8A*ENSGALG000000006067


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR024156  Small GTPase superfamily, ARF type
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019003 GDP binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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