ENSDARG00000069420


Danio rerio

Features
Gene ID: ENSDARG00000069420
  
Biological name :trim23
  
Synonyms : trim23 / tripartite motif containing 23
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM23 / P36406 / Q8BGX0
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 11790881
Gene end: 11840353
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107078
NCBI entrez gene - 767706     See in Manteia.
swissprot - F1Q4Q5
ZFIN ID - ZDB-GENE-060929-804
Ensembl - ENSDARG00000069420
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM23ENSGALG00000014765Gallus gallus
 P36406ENSG00000113595Homo sapiens
 Q8BGX0ENSMUSG00000021712Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arf3a / ADP-ribosylation factor 3a / ARF3* / P61204* / P61205* / ADP ribosylation factor 3*ENSDARG0000007053918
arf4a / ADP-ribosylation factor 4a / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000004598918
arf5 / ADP-ribosylation factor 5 / P84085*ENSDARG0000007047218
arf2a / ADP-ribosylation factor 2aENSDARG0000001476318
arf3b / ADP-ribosylation factor 3bENSDARG0000003699818
zgc:77650 / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000011389918
arf2b / ADP-ribosylation factor 2b / Arf2* / Q8BSL7* / ADP-ribosylation factor 2 *ENSDARG0000001639318
arf1 / ADP-ribosylation factor 1ENSDARG0000000948417
zgc:110286ENSDARG0000007421016
si:ch1073-165f9.2ENSDARG0000007387616
arf4b / ADP-ribosylation factor 4bENSDARG0000010033916
arf6a / ADP-ribosylation factor 6a / ARF6* / P62330* / ADP ribosylation factor 6*ENSDARG0000010162615
arf6b / ADP-ribosylation factor 6b / ARF6* / P62330* / P62331* / ADP ribosylation factor 6*ENSDARG0000005292815
arl2 / ADP-ribosylation factor-like 2 / Q9D0J4* / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)* / ADP-ribosylation factor-like protein 2 *ENSDARG0000006949613
arl3l2 / ADP-ribosylation factor-like 3, like 2ENSDARG0000001540413
zgc:110197 / ARL3 (1 of many) / ARL3* / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000005679413
arl3l1 / ADP-ribosylation factor-like 3, like 1ENSDARG0000011110613
arl14 / ADP-ribosylation factor-like 14 / Q8N4G2* / ADP ribosylation factor like GTPase 14*ENSDARG0000006322313
arl3 / Q1MTE5 / ADP-ribosylation factor-like 3 / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000007140912
arl11 / ADP-ribosylation factor-like 11 / Q6P3A9* / Q969Q4* / ADP ribosylation factor like GTPase 11* / ADP-ribosylation factor-like protein 11 *ENSDARG0000003663711


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR024156  Small GTPase superfamily, ARF type
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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