ENSDARG00000070539


Danio rerio

Features
Gene ID: ENSDARG00000070539
  
Biological name :arf3a
  
Synonyms : ADP-ribosylation factor 3a / arf3a
  
Possible biological names infered from orthology : ADP ribosylation factor 3 / ARF3 / P61204 / P61205
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 27622020
Gene end: 27633730
  
Corresponding Affymetrix probe sets: Dr.3294.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000094413
NCBI entrez gene - 445047     See in Manteia.
RefSeq - NM_001003441
RefSeq Peptide - NP_001003441
swissprot - Q6DHP3
ZFIN ID - ZDB-GENE-040801-176
Ensembl - ENSDARG00000070539
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARF3ENSG00000134287Homo sapiens
 Arf3ENSMUSG00000051853Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arf3b / ADP-ribosylation factor 3bENSDARG0000003699899
arf1 / ADP-ribosylation factor 1ENSDARG0000000948495
arf2b / ADP-ribosylation factor 2b / Arf2* / Q8BSL7* / ADP-ribosylation factor 2 *ENSDARG0000001639394
arf2a / ADP-ribosylation factor 2aENSDARG0000001476394
zgc:77650 / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000011389981
arf5 / ADP-ribosylation factor 5 / P84085*ENSDARG0000007047281
arf4a / ADP-ribosylation factor 4a / ARF5* / P84084* / P84085* / ADP ribosylation factor 5*ENSDARG0000004598980
arf4b / ADP-ribosylation factor 4bENSDARG0000010033973
si:ch1073-165f9.2ENSDARG0000007387669
zgc:110286ENSDARG0000007421068
arf6a / ADP-ribosylation factor 6a / ARF6* / P62330* / ADP ribosylation factor 6*ENSDARG0000010162666
arf6b / ADP-ribosylation factor 6b / ARF6* / P62330* / P62331* / ADP ribosylation factor 6*ENSDARG0000005292866
trim23 / tripartite motif containing 23 / P36406* / Q8BGX0* / E3 ubiquitin-protein ligase TRIM23 *ENSDARG0000006942056
arl2 / ADP-ribosylation factor-like 2 / Q9D0J4* / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)* / ADP-ribosylation factor-like protein 2 *ENSDARG0000006949646
arl3l2 / ADP-ribosylation factor-like 3, like 2ENSDARG0000001540445
arl14 / ADP-ribosylation factor-like 14 / Q8N4G2* / ADP ribosylation factor like GTPase 14*ENSDARG0000006322345
arl3l1 / ADP-ribosylation factor-like 3, like 1ENSDARG0000011110645
zgc:110197 / ARL3 (1 of many) / ARL3* / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000005679445
arl3 / Q1MTE5 / ADP-ribosylation factor-like 3 / P36405* / Q9WUL7* / ADP ribosylation factor like GTPase 3* / ADP-ribosylation factor-like protein 3 *ENSDARG0000007140944
arl11 / ADP-ribosylation factor-like 11 / Q6P3A9* / Q969Q4* / ADP ribosylation factor like GTPase 11* / ADP-ribosylation factor-like protein 11 *ENSDARG0000003663741


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the Golgi membrane
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000040111 pi4kb / Q49GP3 / phosphatidylinositol 4-kinase, catalytic, beta / Q8BKC8* / Q9UBF8* / phosphatidylinositol 4-kinase beta*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr