ENSMUSG00000051853


Mus musculus

Features
Gene ID: ENSMUSG00000051853
  
Biological name :Arf3
  
Synonyms : ADP-ribosylation factor 3 / Arf3 / P61205
  
Possible biological names infered from orthology : P61204
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: F1
Gene start: 98736634
Gene end: 98763214
  
Corresponding Affymetrix probe sets: 10432256 (MoGene1.0st)   1421789_s_at (Mouse Genome 430 2.0 Array)   1423973_a_at (Mouse Genome 430 2.0 Array)   1434787_at (Mouse Genome 430 2.0 Array)   1437331_a_at (Mouse Genome 430 2.0 Array)   1456007_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000050689
Ensembl peptide - ENSMUSP00000114739
NCBI entrez gene - 11842     See in Manteia.
MGI - MGI:99432
RefSeq - XM_011245445
RefSeq - NM_007478
RefSeq Peptide - NP_001342439
RefSeq Peptide - NP_031504
swissprot - P61205
swissprot - Q3U344
swissprot - D3YV25
Ensembl - ENSMUSG00000051853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arf3aENSDARG00000070539Danio rerio
 ARF3ENSG00000134287Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arf1 / P84078 / ADP-ribosylation factor 1 ENSMUSG0000004807696
Arf2 / Q8BSL7 / ADP-ribosylation factor 2 ENSMUSG0000006242194
Arf4 / P61750 / ADP-ribosylation factor 4 / P18085*ENSMUSG0000002187779
Arf5 / P84084 / ADP-ribosylation factor 5 / P84085*ENSMUSG0000002044078
Arf6 / P62331 / ADP-ribosylation factor 6 / P62330*ENSMUSG0000004414766
Q8BGX0 / Trim23 / E3 ubiquitin-protein ligase TRIM23 / P36406* / tripartite motif containing 23*ENSMUSG0000002171259
Arl2 / Q9D0J4 / ADP-ribosylation factor-like protein 2 / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)*ENSMUSG0000002494447
Arl3 / Q9WUL7 / ADP-ribosylation factor-like protein 3 / P36405* / ADP ribosylation factor like GTPase 3*ENSMUSG0000002503545
Arl14 / ADP ribosylation factor like GTPase 14 / Q8N4G2*ENSMUSG0000009820744
Arl11 / Q6P3A9 / ADP-ribosylation factor-like protein 11 / Q969Q4* / ADP ribosylation factor like GTPase 11*ENSMUSG0000004315741
Arl8b / Q9CQW2 / ADP-ribosylation factor-like protein 8B / Q9NVJ2* / ADP ribosylation factor like GTPase 8B*ENSMUSG0000003010533
Arl8a / Q8VEH3 / ADP-ribosylation factor-like protein 8A / Q96BM9* / ADP ribosylation factor like GTPase 8A*ENSMUSG0000002642631
Arl15 / Q8BGR6 / ADP-ribosylation factor-like protein 15 / Q9NXU5* / ADP ribosylation factor like GTPase 15*ENSMUSG0000004234831


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0015031 protein transport TAS
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the Golgi membrane
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Apptm1b(KOMP)Wtsi/Apptm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Apptm1b(KOMP)Wtsi/Ics

 MP:0005387 immune system phenotype 
Show

Allelic Composition: Apptm1b(KOMP)Wtsi/Apptm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Apptm1b(KOMP)Wtsi/Ics

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000038861 Pi4kb / Q8BKC8 / Phosphatidylinositol 4-kinase beta / Q9UBF8*  / complex / reaction






 

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contact: otassy@igbmc.fr