ENSMUSG00000021712


Mus musculus

Features
Gene ID: ENSMUSG00000021712
  
Biological name :Trim23
  
Synonyms : E3 ubiquitin-protein ligase TRIM23 / Q8BGX0 / Trim23
  
Possible biological names infered from orthology : P36406 / tripartite motif containing 23
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: D1
Gene start: 104178797
Gene end: 104203372
  
Corresponding Affymetrix probe sets: 10406953 (MoGene1.0st)   1426969_at (Mouse Genome 430 2.0 Array)   1429998_at (Mouse Genome 430 2.0 Array)   1456089_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022225
Ensembl peptide - ENSMUSP00000069371
Ensembl peptide - ENSMUSP00000070767
NCBI entrez gene - 81003     See in Manteia.
MGI - MGI:1933161
RefSeq - NM_030731
RefSeq - XM_006517794
RefSeq Peptide - NP_109656
swissprot - Q8BGX0
Ensembl - ENSMUSG00000021712
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim23ENSDARG00000069420Danio rerio
 TRIM23ENSGALG00000014765Gallus gallus
 P36406ENSG00000113595Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arf1 / P84078 / ADP-ribosylation factor 1 ENSMUSG0000004807619
Arf2 / Q8BSL7 / ADP-ribosylation factor 2 ENSMUSG0000006242119
Arf3 / P61205 / ADP-ribosylation factor 3 / P61204*ENSMUSG0000005185319
Arf5 / P84084 / ADP-ribosylation factor 5 / P84085*ENSMUSG0000002044018
Arf4 / P61750 / ADP-ribosylation factor 4 / P18085*ENSMUSG0000002187718
Arf6 / P62331 / ADP-ribosylation factor 6 / P62330*ENSMUSG0000004414717
Arl2 / Q9D0J4 / ADP-ribosylation factor-like protein 2 / P36404* / ARL2-SNX15* / ADP ribosylation factor like GTPase 2* / ARL2-SNX15 readthrough (NMD candidate)*ENSMUSG0000002494414
Arl14 / ADP ribosylation factor like GTPase 14 / Q8N4G2*ENSMUSG0000009820714
Arl3 / Q9WUL7 / ADP-ribosylation factor-like protein 3 / P36405* / ADP ribosylation factor like GTPase 3*ENSMUSG0000002503513
Arl11 / Q6P3A9 / ADP-ribosylation factor-like protein 11 / Q969Q4* / ADP ribosylation factor like GTPase 11*ENSMUSG0000004315712
Arl15 / Q8BGR6 / ADP-ribosylation factor-like protein 15 / Q9NXU5* / ADP ribosylation factor like GTPase 15*ENSMUSG0000004234810
Arl8b / Q9CQW2 / ADP-ribosylation factor-like protein 8B / Q9NVJ2* / ADP ribosylation factor like GTPase 8B*ENSMUSG000000301059
Arl8a / Q8VEH3 / ADP-ribosylation factor-like protein 8A / Q96BM9* / ADP ribosylation factor like GTPase 8A*ENSMUSG000000264269


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR024156  Small GTPase superfamily, ARF type
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination ISS
 cellular_componentGO:0000139 Golgi membrane ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005525 GTP binding ISS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019003 GDP binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr