ENSGALG00000015412


Gallus gallus

Features
Gene ID: ENSGALG00000015412
  
Biological name :ARL13B
  
Synonyms : ADP ribosylation factor like GTPase 13B / ARL13B
  
Possible biological names infered from orthology : ADP-ribosylation factor-like protein 13B / Q3SXY8 / Q640N2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 89700493
Gene end: 89743259
  
Corresponding Affymetrix probe sets: Gga.17492.1.S1_at (Chicken Array)   GgaAffx.11778.1.S1_s_at (Chicken Array)   GgaAffx.24673.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058073
Ensembl peptide - ENSGALP00000024815
NCBI entrez gene - 418431     See in Manteia.
RefSeq - XM_416642
RefSeq - XM_015297918
RefSeq - XM_015297922
RefSeq - XM_004938308
RefSeq - XM_004938309
RefSeq - XM_004938310
RefSeq - XM_004938311
RefSeq - XM_004938312
RefSeq - XM_004938313
RefSeq - XM_015297891
RefSeq - XM_015297902
RefSeq - XM_015297910
swissprot - F1NUR0
swissprot - A0A1D5PYL8
Ensembl - ENSGALG00000015412
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arl13bENSDARG00000012763Danio rerio
 ARL13BENSG00000169379Homo sapiens
 Arl13bENSMUSG00000022911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARL13A / ADP ribosylation factor like GTPase 13A / Q5H913* / Q9D416* / ADP-ribosylation factor-like protein 13A *ENSGALG0000000663621
ARFRP1 / ADP ribosylation factor related protein 1 / Q13795* / Q8BXL7*ENSGALG0000000610115


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0021532 neural tube patterning IEA
 biological_processGO:0021830 interneuron migration from the subpallium to the cortex IEA
 biological_processGO:0021943 formation of radial glial scaffolds IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070986 left/right axis specification IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0060170 ciliary membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
ARL13B-mediated ciliary trafficking of INPP5E


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001964 INPP5E / inositol polyphosphate-5-phosphatase E / Q9JII1* / Q9NRR6* / 72 kDa inositol polyphosphate 5-phosphatase *  / reaction / complex
 ENSGALG00000033062 PDE6D / phosphodiesterase 6D / O43924* / O55057* / Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit delta *  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr