ENSGALG00000015609


Gallus gallus

Features
Gene ID: ENSGALG00000015609
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : H2AFB1 / H2AFB2 / H2AFB3 / H2A histone family member B1 / H2A histone family member B2 / H2A histone family member B3 / P0C5Y9 / P0C5Z0
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 82189053
Gene end: 82189577
  
Corresponding Affymetrix probe sets: Gga.15549.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025122
NCBI entrez gene - 100859381     See in Manteia.
RefSeq - XM_004936303
swissprot - F1NDD7
Ensembl - ENSGALG00000015609
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H2AFB1ENSG00000274183Homo sapiens
 H2AFB2ENSG00000277858Homo sapiens
 H2AFB3ENSG00000277745Homo sapiens
 H2afb1ENSMUSG00000067441Mus musculus
 H2afb2ENSMUSG00000082482Mus musculus
 H2afb3ENSMUSG00000083616Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000002711331
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000003571531
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000003157131
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000002994131
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000002731531
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000002837231
P02263 / H2A-VII / Histone H2A-IV / H2AFJ* / Q8R1M2* / Q9BTM1* / Histone H2A.J * / H2A histone family member J*ENSGALG0000003264531
H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSGALG0000002644930
H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSGALG0000004570530
H2AFJ / histone H2A.J / Q6GSS7* / Q16777* / Q64523* / Q6FI13* / HIST2H2AC* / HIST2H2AA3* / Hist2h2aa1* / HIST2H2AA4* / Hist2h2aa2* / Histone H2A type 2-C * / Histone H2A type 2-A * / histo...ENSGALG0000003834330
H2AFY2 / H2A histone family member Y2 / Q8CCK0* / Q9P0M6* / Core histone macro-H2A.2 *ENSGALG0000000479425
ENSGALG0000001677125
H2AFY / O93327 / Core histone macro-H2A.1 / Q9QZQ8* / O75367* / H2A histone family member Y*ENSGALG0000004014123
ENSGALG0000001677022


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR009072  Histone-fold
 IPR032458  Histone H2A conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006342 chromatin silencing IBA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0000790 nuclear chromatin IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Condensation of Prophase Chromosomes
Oxidative Stress Induced Senescence
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
Deposition of new CENPA-containing nucleosomes at the centromere
RNA Polymerase I Promoter Opening
RNA Polymerase I Chain Elongation
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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