ENSGALG00000015813


Gallus gallus

Features
Gene ID: ENSGALG00000015813
  
Biological name :USP16
  
Synonyms : ubiquitin specific peptidase 16 / USP16
  
Possible biological names infered from orthology : Q99LG0 / Q9Y5T5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 103990536
Gene end: 104008446
  
Corresponding Affymetrix probe sets: Gga.13828.1.A1_at (Chicken Array)   Gga.13828.1.S1_at (Chicken Array)   Gga.14655.1.S1_at (Chicken Array)   GgaAffx.24778.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025448
NCBI entrez gene - 418485     See in Manteia.
RefSeq - XM_004938372
RefSeq - XM_416693
RefSeq - XM_015299532
RefSeq - XM_015299541
swissprot - E1C214
Ensembl - ENSGALG00000015813
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp16ENSDARG00000060633Danio rerio
 USP16ENSG00000156256Homo sapiens
 Usp16ENSMUSG00000025616Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP45* / Q70EL2* / Q8K387* / ubiquitin specific petidase 45* / ubiquitin specific peptidase 45*ENSGALG0000003181422
USP20 / ubiquitin specific peptidase 20 / Q8C6M1* / Q9Y2K6*ENSGALG0000004110417
USP33 / ubiquitin specific peptidase 33 / Q8R5K2* / Q8TEY7*ENSGALG0000000897417
USP8 / ubiquitin specific peptidase 8 / P40818* / Q80U87*ENSGALG0000000589417
USP2 / ubiquitin specific peptidase 2 / O75604* / O88623*ENSGALG0000000675513
USP45 / Q70EL2* / Q8K387* / ubiquitin specific petidase 45* / ubiquitin specific peptidase 45*ENSGALG000000154789


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain
 IPR030849  Ubiquitin carboxyl-terminal hydrolase 16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0016578 histone deubiquitination IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0035522 monoubiquitinated histone H2A deubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045901 positive regulation of translational elongation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051289 protein homotetramerization IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0070537 histone H2A K63-linked deubiquitination IEA
 biological_processGO:0140014 mitotic nuclear division IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IEA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0043130 ubiquitin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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