ENSDARG00000060633


Danio rerio

Features
Gene ID: ENSDARG00000060633
  
Biological name :usp16
  
Synonyms : A8HAL1 / ubiquitin specific peptidase 16 / usp16
  
Possible biological names infered from orthology : Q99LG0 / Q9Y5T5
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 41290948
Gene end: 41311295
  
Corresponding Affymetrix probe sets: Dr.21872.1.A1_at (Zebrafish Array)   Dr.21873.1.A1_at (Zebrafish Array)   Dr.24329.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120379
Ensembl peptide - ENSDARP00000123938
Ensembl peptide - ENSDARP00000080080
NCBI entrez gene - 569700     See in Manteia.
RefSeq - NM_001146097
RefSeq - XM_009291912
RefSeq - XM_009291915
RefSeq - XM_021481448
RefSeq - XM_021481449
RefSeq Peptide - NP_001139569
swissprot - A8HAL1
swissprot - F8W4A5
swissprot - A8HAL0
ZFIN ID - ZDB-GENE-030131-4153
Ensembl - ENSDARG00000060633
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP16ENSGALG00000015813Gallus gallus
 USP16ENSG00000156256Homo sapiens
 Usp16ENSMUSG00000025616Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp45 / ubiquitin specific peptidase 45 / Q70EL2* / Q8K387* / ubiquitin specific petidase 45*ENSDARG0000007501333
usp20 / A5PN09 / ubiquitin specific peptidase 20 / Q9Y2K6*ENSDARG0000002750117
usp33 / A5PMR2 / ubiquitin specific peptidase 33 / Q8R5K2* / Q8TEY7*ENSDARG0000001616317
usp2b / ubiquitin specific peptidase 2b / USP2* / O75604* / O88623* / ubiquitin specific peptidase 2*ENSDARG0000007412015
usp2a / ubiquitin specific peptidase 2a / USP2* / O75604* / O88623* / ubiquitin specific peptidase 2*ENSDARG0000002010714
usp8 / ubiquitin specific peptidase 8 / P40818* / Q80U87*ENSDARG0000006371914
usp21 / ubiquitin specific peptidase 21 / Q9UK80*ENSDARG0000009428013


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain
 IPR030849  Ubiquitin carboxyl-terminal hydrolase 16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle ISS
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus ISS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0016578 histone deubiquitination ISS
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045901 positive regulation of translational elongation ISS
 biological_processGO:0051289 protein homotetramerization ISS
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0070537 histone H2A K63-linked deubiquitination ISS
 cellular_componentGO:0005634 nucleus ISS
 molecular_functionGO:0003713 transcription coactivator activity ISS
 molecular_functionGO:0004197 cysteine-type endopeptidase activity ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity ISS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS
 molecular_functionGO:0042393 histone binding ISS
 molecular_functionGO:0043130 ubiquitin binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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