ENSGALG00000023419


Gallus gallus

Features
Gene ID: ENSGALG00000023419
  
Biological name :HOXD4
  
Synonyms : homeobox D4 / HOXD4
  
Possible biological names infered from orthology : Homeobox protein Hox-D4 / P09016 / P10628
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 16340652
Gene end: 16342313
  
Corresponding Affymetrix probe sets: Gga.724.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000037899
NCBI entrez gene - 424139     See in Manteia.
RefSeq - NM_001012293
RefSeq Peptide - NP_001012293
swissprot - F1NZJ3
Ensembl - ENSGALG00000023419
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxd4aENSDARG00000059276Danio rerio
 HOXD4ENSG00000170166Homo sapiens
 Hoxd4ENSMUSG00000115956Mus musculus
 Hoxd4ENSMUSG00000101174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXC4 / homeobox C4 / P09017* / Q08624*ENSGALG0000003553955
HOXB4 / P14840 / Homeobox protein Hox-B4 / P10284* / P17483* / homeobox B4*ENSGALG0000000028454
HOXA4 / P17277 / Homeobox protein Hox-A4 / Q00056* / homeobox A4*ENSGALG0000002262251
HOXB5ENSGALG0000003490738
HOXA5 / Q6B3N0 / Homeobox protein Hox-A5 / P09021* / P20719* / homeobox A5*ENSGALG0000002592938
HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSGALG0000003041635
HOXA7 / Q90VZ9 / Homeobox protein Hox-A7 / P02830* / P31268* / homeobox A7*ENSGALG0000002698933
HOXB7 / homeobox B7 / P09024* / P09629* / Homeobox protein Hox-B7 *ENSGALG0000003274032
HOXA6* / HOXB6* / P09023* / P09092* / P17509* / P31267* / homeobox B6* / homeobox A6* / Homeobox protein Hox-B6 * / Homeobox protein Hox-A6 *ENSGALG0000003761932
HOXA6 / Q5YLH5 / Homeobox protein Hox-A6 ENSGALG0000002890831
HOXC6 / homeobox C6 / P09630* / P10629* / Homeobox protein Hox-C6 *ENSGALG0000003905131
HOXB8 / homeobox B8 / P09632* / P17481* / Homeobox protein Hox-B8 *ENSGALG0000004032030
HOXC8 / Q9YH13 / Homeobox protein Hox-C8 / P09025* / P31273* / homeobox C8*ENSGALG0000003726228
HOXD8 / P23459 / Homeobox protein Hox-D8 / P13378* / P23463* / homeobox D8*ENSGALG0000003727227
CDX1 / Q9DEB6 / Homeobox protein CDX-1 / P18111* / P47902* / caudal type homeobox 1*ENSGALG0000000567925
CDX2 / homeobox protein CDX-2 / P43241* / Q99626* / caudal type homeobox 2*ENSGALG0000003498324
CDX4 / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765724
CDX4* / O14627* / Q07424* / caudal type homeobox 4* / Homeobox protein CDX-4 *ENSGALG0000000765624


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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