ENSDARG00000059276


Danio rerio

Features
Gene ID: ENSDARG00000059276
  
Biological name :hoxd4a
  
Synonyms : homeobox D4a / hoxd4a
  
Possible biological names infered from orthology : homeobox D4 / Homeobox protein Hox-D4 / HOXD4 / P09016 / P10628
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 1948465
Gene end: 1951144
  
Corresponding Affymetrix probe sets: Dr.4119.2.S1_at (Zebrafish Array)   Dr.4964.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076791
NCBI entrez gene - 30329     See in Manteia.
swissprot - B0S5Y5
ZFIN ID - ZDB-GENE-980526-214
Ensembl - ENSDARG00000059276
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXD4ENSGALG00000023419Gallus gallus
 HOXD4ENSG00000170166Homo sapiens
 Hoxd4ENSMUSG00000115956Mus musculus
 Hoxd4ENSMUSG00000101174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353352
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033850
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250135
hoxb5a / P09014 / homeobox B5aENSDARG0000001305733
hoxb5b / homeobox B5bENSDARG0000005403032
hoxb6a / homeobox B6aENSDARG0000001063029
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195429
hoxb6b / homeobox B6bENSDARG0000002651329
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034028
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402527
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034627
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603027
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602725
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034324
cdx1b / caudal type homeobox 1 bENSDARG0000011613922
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455421
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629221


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001286 caudal vein plexus caudal vein plexus aplastic , abnormal
Show

 ZFA:0005033 vertebral artery vertebral artery aplastic , abnormal
Show

 ZFA:0005035 subintestinal vein subintestinal vein aplastic , abnormal
Show

 ZFA:0005249 vasculature vasculature lacks parts or has fewer parts of type intersegmental vessel , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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