ENSDARG00000013533


Danio rerio

Features
Gene ID: ENSDARG00000013533
  
Biological name :hoxb4a
  
Synonyms : homeobox B4a / hoxb4a / P22574
  
Possible biological names infered from orthology : homeobox B4 / Homeobox protein Hox-B4 / HOXB4 / P10284 / P17483
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 23710839
Gene end: 23723982
  
Corresponding Affymetrix probe sets: Dr.15716.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125694
Ensembl peptide - ENSDARP00000008458
NCBI entrez gene - 30340     See in Manteia.
swissprot - P22574
swissprot - Q0D251
swissprot - B3DHP6
ZFIN ID - ZDB-GENE-990415-105
Ensembl - ENSDARG00000013533
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXB4ENSGALG00000000284Gallus gallus
 HOXB4ENSG00000182742Homo sapiens
 Hoxb4ENSMUSG00000038692Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927654
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033853
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250136
hoxb5a / P09014 / homeobox B5aENSDARG0000001305733
hoxb5b / homeobox B5bENSDARG0000005403033
hoxb6a / homeobox B6aENSDARG0000001063031
hoxb6b / homeobox B6bENSDARG0000002651330
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195430
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034028
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602727
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402527
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034626
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603026
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034325
cdx1b / caudal type homeobox 1 bENSDARG0000011613924
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629223
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455422


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr