ENSDARG00000054030


Danio rerio

Features
Gene ID: ENSDARG00000054030
  
Biological name :hoxb5b
  
Synonyms : homeobox B5b / hoxb5b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 27129659
Gene end: 27131735
  
Corresponding Affymetrix probe sets: Dr.5756.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000070639
NCBI entrez gene - 58052     See in Manteia.
RefSeq - NM_131537
RefSeq Peptide - NP_571612
swissprot - A0A0R4I9D0
ZFIN ID - ZDB-GENE-000823-6
Ensembl - ENSDARG00000054030
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxb5a / P09014 / homeobox B5aENSDARG0000001305776
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250146
hoxb6a / homeobox B6aENSDARG0000001063032
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353330
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034030
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927630
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603029
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033828
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602727
hoxb6b / homeobox B6bENSDARG0000002651327
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195426
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034326
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034626
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402526
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629221
cdx1b / caudal type homeobox 1 bENSDARG0000011613921
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart increased size , abnormal
Show

 ZFA:0000471 atrium atrium cardiac muscle cell increased amount , abnormal
Show

 ZFA:0001721 presumptive atrium primitive heart tube presumptive atrium primitive heart tube cardiac muscle myoblast increased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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