ENSDARG00000036292


Danio rerio

Features
Gene ID: ENSDARG00000036292
  
Biological name :cdx4
  
Synonyms : caudal type homeobox 4 / cdx4
  
Possible biological names infered from orthology : Homeobox protein CDX-4 / O14627 / Q07424
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 32961718
Gene end: 32965169
  
Corresponding Affymetrix probe sets: Dr.11836.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000098008
NCBI entrez gene - 798281     See in Manteia.
RefSeq - NM_131109
RefSeq Peptide - NP_571184
swissprot - A8KBT9
ZFIN ID - ZDB-GENE-980526-330
Ensembl - ENSDARG00000036292
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000007656Gallus gallus
 CDX4ENSGALG00000007657Gallus gallus
 CDX4ENSG00000131264Homo sapiens
 Cdx4ENSMUSG00000031326Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdx1b / caudal type homeobox 1 bENSDARG0000011613944
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455434
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033823
hoxb5b / homeobox B5bENSDARG0000005403021
hoxb5a / P09014 / homeobox B5aENSDARG0000001305721
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353321
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250121
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603020
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927620
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034619
hoxb6a / homeobox B6aENSDARG0000001063019
hoxb6b / homeobox B6bENSDARG0000002651319
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034019
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195419
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602718
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034318
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402517


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR006820  Caudal-like activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IGI
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009948 anterior/posterior axis specification IGI
 biological_processGO:0009952 anterior/posterior pattern specification IMP
 biological_processGO:0010468 regulation of gene expression IMP
 biological_processGO:0021903 rostrocaudal neural tube patterning IGI
 biological_processGO:0021906 hindbrain-spinal cord boundary formation IMP
 biological_processGO:0030097 hemopoiesis IGI
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0036342 post-anal tail morphogenesis IMP
 biological_processGO:0048384 retinoic acid receptor signaling pathway IGI
 biological_processGO:0048617 embryonic foregut morphogenesis IMP
 biological_processGO:0048793 pronephros development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball constricted , abnormal
Show

 ZFA:0000029 hindbrain hindbrain increased length , abnormal
hindbrain neuron mislocalised posteriorly , abnormal
hindbrain posterior region spatial pattern , abnormal
hindbrain posterior region increased distribution , abnormal
Show

 ZFA:0000038 margin margin absent , abnormal
Show

 ZFA:0000041 mesoderm mesoderm posterior region spatial pattern , abnormal
mesoderm posterior region increased distribution , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000069 rhombomere 6 rhombomere 6 increased amount , abnormal
Show

 ZFA:0000075 spinal cord spinal cord decreased length , abnormal
spinal cord motor neuron absent , abnormal
spinal cord oligodendrocyte absent , abnormal
Show

 ZFA:0000077 tail bud tail bud increased amount , abnormal
tail bud decreased amount , abnormal
Show

 ZFA:0000081 trunk mesenchyme trunk mesenchyme distended , abnormal
Show

 ZFA:0000094 blood island blood island decreased amount , abnormal
Show

 ZFA:0000106 extension extension aplastic , abnormal
Show

 ZFA:0000123 liver liver mislocalised posteriorly , abnormal
Show

 ZFA:0000140 pancreas pancreas mislocalised posteriorly , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
pronephros quality , abnormal
Show

 ZFA:0000153 rhombomere 8 rhombomere 8 aplastic , abnormal
Show

 ZFA:0000155 somite somite condensed , abnormal
Show

 ZFA:0000254 pancreas primordium pancreas primordium increased size , abnormal
pancreas primordium mislocalised posteriorly , abnormal
Show

 ZFA:0000255 paraxial mesoderm paraxial mesoderm spatial pattern , abnormal
paraxial mesoderm decreased distribution , abnormal
paraxial mesoderm anterior margin spatial pattern , abnormal
paraxial mesoderm anterior margin decreased distribution , abnormal
Show

 ZFA:0000568 presumptive blood presumptive blood absent , abnormal
Show

 ZFA:0000823 rhombomere 5 rhombomere 5 increased amount , abnormal
Show

 ZFA:0000949 rhombomere 7 rhombomere 7 increased amount , abnormal
rhombomere 7 decreased size , abnormal
Show

 ZFA:0001032 rhombomere 4 rhombomere 4 increased amount , abnormal
Show

 ZFA:0001055 pronephric duct opening pronephric duct opening aplastic , abnormal
Show

 ZFA:0001064 rhombomere rhombomere increased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism shape , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism spherical , abnormal
whole organism viability , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region truncated , abnormal
post-vent region decreased size , abnormal
post-vent region has fewer parts of type somite , abnormal
post-vent region kinked , abnormal
post-vent region quality , abnormal
post-vent region deformed , abnormal
post-vent region aplastic , abnormal
post-vent region morphology , abnormal
Show

 ZFA:0001120 neuroectoderm neuroectoderm anterior margin spatial pattern , abnormal
neuroectoderm anterior margin decreased distribution , abnormal
Show

 ZFA:0001200 corpuscles of Stannius corpuscles of Stannius decreased size , abnormal
corpuscles of Stannius mislocalised posteriorly , abnormal
corpuscles of Stannius increased amount , abnormal
corpuscles of Stannius increased size , abnormal
corpuscles of Stannius aplastic , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas mislocalised posteriorly , abnormal
Show

 ZFA:0001260 endocrine pancreas endocrine pancreas mislocalised posteriorly , abnormal
endocrine pancreas decreased amount , abnormal
Show

 ZFA:0001338 intestine intestine morphology , abnormal
Show

 ZFA:0001390 pancreatic bud pancreatic bud increased size , abnormal
pancreatic bud mislocalised posteriorly , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus cystic , abnormal
pronephric glomerulus bilateral , abnormal
pronephric glomerulus dilated , abnormal
Show

 ZFA:0001620 pronephric proximal convoluted tubule pronephric proximal convoluted tubule increased length , abnormal
pronephric proximal convoluted tubule decreased length , abnormal
Show

 ZFA:0001621 pronephric proximal straight tubule pronephric proximal straight tubule decreased length , abnormal
pronephric proximal straight tubule aplastic , abnormal
Show

 ZFA:0001622 pronephric distal early tubule pronephric distal early tubule decreased length , abnormal
pronephric distal early tubule increased length , abnormal
pronephric distal early tubule aplastic , abnormal
Show

 ZFA:0001623 posterior pronephric duct posterior pronephric duct decreased length , abnormal
posterior pronephric duct aplastic , abnormal
Show

 ZFA:0001624 pronephric distal late tubule pronephric distal late tubule decreased length , abnormal
pronephric distal late tubule increased length , abnormal
pronephric distal late tubule aplastic , abnormal
Show

 ZFA:0001673 pronephric podocyte pronephric podocyte unfused from pronephric podocyte , abnormal
Show

 ZFA:0005743 pancreatic D cell pancreatic D cell absent , abnormal
Show

 ZFA:0005830 hematopoietic cell hematopoietic cell decreased amount , abnormal
Show

 ZFA:0007042 spinal cord neural tube spinal cord neural tube anterior margin spatial pattern , abnormal
spinal cord neural tube anterior margin decreased distribution , abnormal
Show

 ZFA:0009044 blood cell blood cell decreased amount , abnormal
Show

 ZFA:0009101 insulin secreting cell insulin secreting cell mislocalised anteriorly , abnormal
insulin secreting cell mislocalised posteriorly , abnormal
Show

 ZFA:0009102 pancreatic B cell pancreatic B cell increased amount , abnormal
Show

 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron decreased amount , abnormal
Show

 ZFA:0009165 neural crest cell neural crest cell mislocalised posteriorly , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009285 podocyte podocyte mislocalised posteriorly , abnormal
podocyte aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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