ENSDARG00000070343


Danio rerio

Features
Gene ID: ENSDARG00000070343
  
Biological name :hoxc6a
  
Synonyms : homeobox C6a / hoxc6a
  
Possible biological names infered from orthology : homeobox C6 / Homeobox protein Hox-C6 / HOXC6 / P09630 / P10629
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36115541
Gene end: 36116907
  
Corresponding Affymetrix probe sets: Dr.5735.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107797
swissprot - A2BE63
ZFIN ID - ZDB-GENE-990415-113
Ensembl - ENSDARG00000070343
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC6ENSGALG00000039051Gallus gallus
 HOXC6ENSG00000197757Homo sapiens
 Hoxc6ENSMUSG00000001661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195468
hoxb6b / homeobox B6bENSDARG0000002651339
hoxb6a / homeobox B6aENSDARG0000001063038
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603036
hoxb5b / homeobox B5bENSDARG0000005403034
hoxb5a / P09014 / homeobox B5aENSDARG0000001305734
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034034
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250133
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033832
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034631
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402531
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602731
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927630
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353329
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629223
cdx1b / caudal type homeobox 1 bENSDARG0000011613922
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455422


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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