ENSDARG00000070346


Danio rerio

Features
Gene ID: ENSDARG00000070346
  
Biological name :hoxc8a
  
Synonyms : homeobox C8a / hoxc8a / Q68EH7
  
Possible biological names infered from orthology : homeobox C8 / Homeobox protein Hox-C8 / HOXC8 / P09025 / P31273
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36101185
Gene end: 36103635
  
Corresponding Affymetrix probe sets: Dr.2967.1.A1_at (Zebrafish Array)   Dr.5733.1.A1_at (Zebrafish Array)   Dr.5733.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093913
NCBI entrez gene - 449648     See in Manteia.
swissprot - B2GTK2
swissprot - Q68EH7
ZFIN ID - ZDB-GENE-990415-114
Ensembl - ENSDARG00000070346
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC8ENSGALG00000037262Gallus gallus
 HOXC8ENSG00000037965Homo sapiens
 Hoxc8ENSMUSG00000001657Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602757
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402550
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603032
hoxb6a / homeobox B6aENSDARG0000001063030
hoxb5a / P09014 / homeobox B5aENSDARG0000001305730
hoxb6b / homeobox B6bENSDARG0000002651330
hoxb5b / homeobox B5bENSDARG0000005403029
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927628
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250128
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195427
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034326
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353326
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033824
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034024
cdx1b / caudal type homeobox 1 bENSDARG0000011613921
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455421
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629220


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0031017 exocrine pancreas development IGI
 biological_processGO:0031018 endocrine pancreas development IGI
 biological_processGO:0035118 embryonic pectoral fin morphogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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