ENSDARG00000070340


Danio rerio

Features
Gene ID: ENSDARG00000070340
  
Biological name :hoxc5a
  
Synonyms : homeobox C5a / hoxc5a
  
Possible biological names infered from orthology : AC012531.3 / homeobox C5 / Homeobox protein Hox-C5 / HOXC5 / P32043 / Q00444
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36118738
Gene end: 36120511
  
Corresponding Affymetrix probe sets: Dr.5752.1.S1_at (Zebrafish Array)   NM_131144_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121862
NCBI entrez gene - 30379     See in Manteia.
RefSeq - NM_131144
RefSeq Peptide - NP_571219
swissprot - A2BE62
ZFIN ID - ZDB-GENE-980526-533
Ensembl - ENSDARG00000070340
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000030416Gallus gallus
 AC012531.3ENSG00000273049Homo sapiens
 HOXC5ENSG00000172789Homo sapiens
 Hoxc5ENSMUSG00000022485Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxb5a / P09014 / homeobox B5aENSDARG0000001305739
hoxb5b / homeobox B5bENSDARG0000005403038
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250137
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927633
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034333
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033833
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353333
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603032
hoxb6b / homeobox B6bENSDARG0000002651331
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195431
hoxb6a / homeobox B6aENSDARG0000001063030
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034628
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602727
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402525
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629223
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455421
cdx1b / caudal type homeobox 1 bENSDARG0000011613921


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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