ENSG00000172789


Homo sapiens

Features
Gene ID: ENSG00000172789
  
Biological name :HOXC5
  
Synonyms : homeobox C5 / HOXC5 / Q00444
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 54032853
Gene end: 54035358
  
Corresponding Affymetrix probe sets: 206739_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000309336
NCBI entrez gene - 3222     See in Manteia.
OMIM - 142973
RefSeq - NM_018953
RefSeq Peptide - NP_061826
swissprot - Q00444
Ensembl - ENSG00000172789
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc5aENSDARG00000070340Danio rerio
 ENSGALG00000030416Gallus gallus
 Hoxc5ENSMUSG00000022485Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA5 / P20719 / homeobox A5ENSG0000010600444
HOXB5 / P09067 / homeobox B5ENSG0000012007544
HOXD4 / P09016 / homeobox D4ENSG0000017016637
AC012531.3ENSG0000027304937
HOXC4 / P09017 / homeobox C4ENSG0000019835336
HOXA4 / Q00056 / homeobox A4ENSG0000019757635
HOXB7 / P09629 / homeobox B7ENSG0000026002735
HOXA7 / P31268 / homeobox A7ENSG0000012259234
HOXB4 / P17483 / homeobox B4ENSG0000018274234
HOXA6 / P31267 / homeobox A6ENSG0000010600634
HOXB6 / P17509 / homeobox B6ENSG0000010851134
HOXC6 / P09630 / homeobox C6ENSG0000019775733
HOXB8 / P17481 / homeobox B8ENSG0000012006832
HOXD8 / P13378 / homeobox D8ENSG0000017587931
HOXC8 / P31273 / homeobox C8ENSG0000003796529
CDX1 / P47902 / caudal type homeobox 1ENSG0000011372228
CDX4 / O14627 / caudal type homeobox 4ENSG0000013126425
CDX2 / Q99626 / caudal type homeobox 2ENSG0000016555624


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0030054 cell junction IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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