ENSG00000197757


Homo sapiens

Features
Gene ID: ENSG00000197757
  
Biological name :HOXC6
  
Synonyms : homeobox C6 / HOXC6 / P09630
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 53990624
Gene end: 54030823
  
Corresponding Affymetrix probe sets: 206858_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000377864
Ensembl peptide - ENSP00000424124
Ensembl peptide - ENSP00000423898
Ensembl peptide - ENSP00000243108
NCBI entrez gene - 3223     See in Manteia.
OMIM - 142972
RefSeq - NM_153693
RefSeq - NM_004503
RefSeq Peptide - NP_004494
RefSeq Peptide - NP_710160
swissprot - P09630
swissprot - D6RC34
swissprot - D6RBH4
Ensembl - ENSG00000197757
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc6aENSDARG00000070343Danio rerio
 hoxc6bENSDARG00000101954Danio rerio
 HOXC6ENSGALG00000039051Gallus gallus
 Hoxc6ENSMUSG00000001661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA6 / P31267 / homeobox A6ENSG0000010600637
HOXB6 / P17509 / homeobox B6ENSG0000010851137
HOXA7 / P31268 / homeobox A7ENSG0000012259235
HOXB7 / P09629 / homeobox B7ENSG0000026002734
HOXA5 / P20719 / homeobox A5ENSG0000010600433
HOXC8 / P31273 / homeobox C8ENSG0000003796532
HOXB5 / P09067 / homeobox B5ENSG0000012007532
HOXB8 / P17481 / homeobox B8ENSG0000012006832
HOXC5 / Q00444 / homeobox C5ENSG0000017278931
HOXA4 / Q00056 / homeobox A4ENSG0000019757631
HOXD8 / P13378 / homeobox D8ENSG0000017587931
HOXC4 / P09017 / homeobox C4ENSG0000019835331
HOXD4 / P09016 / homeobox D4ENSG0000017016631
HOXB4 / P17483 / homeobox B4ENSG0000018274230
AC012531.3ENSG0000027304924
CDX1 / P47902 / caudal type homeobox 1ENSG0000011372223
CDX4 / O14627 / caudal type homeobox 4ENSG0000013126421
CDX2 / Q99626 / caudal type homeobox 2ENSG0000016555621


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003714 transcription corepressor activity TAS
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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