ENSDARG00000101954


Danio rerio

Features
Gene ID: ENSDARG00000101954
  
Biological name :hoxc6b
  
Synonyms : homeobox C6b / hoxc6b
  
Possible biological names infered from orthology : homeobox C6 / Homeobox protein Hox-C6 / HOXC6 / P09630 / P10629
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 2198831
Gene end: 2204754
  
Corresponding Affymetrix probe sets: Dr.5729.1.S1_at (Zebrafish Array)   NM_131530_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000157370
Ensembl peptide - ENSDARP00000134791
Ensembl peptide - ENSDARP00000146904
NCBI entrez gene - 58045     See in Manteia.
RefSeq - NM_001328159
RefSeq - NM_131530
RefSeq Peptide - NP_001315088
RefSeq Peptide - NP_571605
swissprot - A0A0R4IKQ2
ZFIN ID - ZDB-GENE-000822-1
Ensembl - ENSDARG00000101954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC6ENSGALG00000039051Gallus gallus
 HOXC6ENSG00000197757Homo sapiens
 Hoxc6ENSMUSG00000001661Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034362
hoxb6b / homeobox B6bENSDARG0000002651336
hoxb6a / homeobox B6aENSDARG0000001063035
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603034
Q9PWM3 / hoxc4a / homeobox C4a / HOXC4* / P09017* / Q08624* / homeobox C4*ENSDARG0000007033833
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353333
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927632
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250132
hoxb5b / homeobox B5bENSDARG0000005403032
hoxb5a / P09014 / homeobox B5aENSDARG0000001305731
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034630
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602730
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402529
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034029
cdx1b / caudal type homeobox 1 bENSDARG0000011613923
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455422
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629222


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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