ENSDARG00000070338


Danio rerio

Features
Gene ID: ENSDARG00000070338
  
Biological name :hoxc4a
  
Synonyms : homeobox C4a / hoxc4a / Q9PWM3
  
Possible biological names infered from orthology : homeobox C4 / HOXC4 / P09017 / Q08624
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36130883
Gene end: 36132563
  
Corresponding Affymetrix probe sets: Dr.5734.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093906
NCBI entrez gene - 30345     See in Manteia.
swissprot - B2GQ57
swissprot - Q9PWM3
ZFIN ID - ZDB-GENE-990415-112
Ensembl - ENSDARG00000070338
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC4ENSGALG00000035539Gallus gallus
 HOXC4ENSG00000198353Homo sapiens
 Hoxc4ENSMUSG00000075394Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P22574 / hoxb4a / homeobox B4a / HOXB4* / P10284* / P17483* / homeobox B4* / Homeobox protein Hox-B4 *ENSDARG0000001353349
hoxd4a / homeobox D4a / HOXD4* / P09016* / P10628* / homeobox D4* / Homeobox protein Hox-D4 *ENSDARG0000005927648
Q9YGT6 / hoxa5a / homeobox A5a / HOXA5* / P09021* / P20719* / homeobox A5* / Homeobox protein Hox-A5 *ENSDARG0000010250131
hoxb5a / P09014 / homeobox B5aENSDARG0000001305729
hoxb5b / homeobox B5bENSDARG0000005403028
hoxb6b / homeobox B6bENSDARG0000002651328
hoxc6b / homeobox C6b / HOXC6* / P09630* / homeobox C6*ENSDARG0000010195428
hoxb6a / homeobox B6aENSDARG0000001063027
hoxb8b / Q8JH55 / homeobox B8bENSDARG0000005402526
hoxc5a / homeobox C5a / HOXC5* / Q00444* / P32043* / AC012531.3* / homeobox C5* / Homeobox protein Hox-C5 *ENSDARG0000007034026
hoxc6a / homeobox C6a / HOXC6* / P09630* / P10629* / homeobox C6* / Homeobox protein Hox-C6 *ENSDARG0000007034325
Q8AWZ0 / hoxb8a / homeobox B8a / HOXB8* / P09632* / P17481* / homeobox B8* / Homeobox protein Hox-B8 *ENSDARG0000005602725
cdx1b / caudal type homeobox 1 bENSDARG0000011613924
hoxb7a / Q8AWY9 / homeobox B7aENSDARG0000005603024
cdx1a / caudal type homeobox 1a / CDX1* / P47902* / caudal type homeobox 1*ENSDARG0000011455423
cdx4 / caudal type homeobox 4 / O14627* / Q07424* / Homeobox protein CDX-4 *ENSDARG0000003629223
Q68EH7 / hoxc8a / homeobox C8a / HOXC8* / P09025* / P31273* / homeobox C8* / Homeobox protein Hox-C8 *ENSDARG0000007034622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001827  Homeobox protein, antennapedia type, conserved site
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR017995  Homeobox protein, antennapedia type
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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