ENSGALG00000027494


Gallus gallus

Features
Gene ID: ENSGALG00000027494
  
Biological name :SPTSSB
  
Synonyms : SPTSSB
  
Possible biological names infered from orthology : Q8NFR3 / Q925E8 / serine palmitoyltransferase small subunit B
  
Species: Gallus gallus
  
Chr. number: 9
Strand: 1
Band:
Gene start: 22040834
Gene end: 22049322
  
Corresponding Affymetrix probe sets: Gga.11984.1.S1_at (Chicken Array)   Gga.11984.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054524
Ensembl peptide - ENSGALP00000040745
Ensembl peptide - ENSGALP00000053674
NCBI entrez gene - 425008     See in Manteia.
RefSeq - XM_015291674
RefSeq - NM_001302111
RefSeq - NM_001302112
RefSeq - NM_001302113
RefSeq - XM_015291671
RefSeq - XM_015291672
RefSeq - XM_015291673
RefSeq Peptide - NP_001289040
RefSeq Peptide - NP_001289041
RefSeq Peptide - NP_001289042
swissprot - R4GFF4
swissprot - A0A1D5PLF8
Ensembl - ENSGALG00000027494
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q1RLT2ENSDARG00000091658Danio rerio
 Q8NFR3ENSG00000196542Homo sapiens
 Q925E8ENSMUSG00000043461Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8NFR3* / Q925E8* / SPTSSB* / serine palmitoyltransferase small subunit B*ENSGALG0000002613139
SPTSSA / serine palmitoyltransferase small subunit A / Gm6993* / Q8R207* / Q969W0*ENSGALG0000002575526


Protein motifs (from Interpro)
Interpro ID Name
 IPR024512  Small subunit of serine palmitoyltransferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000031928 SPTLC2 / serine palmitoyltransferase long chain base subunit 2 / O15270* / P97363*  / complex
 ENSGALG00000013493 SPTLC1 / serine palmitoyltransferase long chain base subunit 1 / O15269* / O35704* / Serine palmitoyltransferase 1 *  / complex
 ENSGALG00000009037 SPTLC3 / serine palmitoyltransferase long chain base subunit 3 / Q8BG54* / Q9NUV7* / Mus musculus serine palmitoyltransferase, long chain base subunit 3 (Sptlc3), transcript variant 1, mRNA.*  / complex






 

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